CX299891

Overview
NameCX299891
Unique NameCX299891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length355
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.386e-27
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 209
            DPLGLADDP+ FAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  204 DPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.852e-27
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 209
            DPLGLADDP+ FAELKVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  183 DPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.867e-26
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 212
            DPLGLADDP+ FAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  183 DPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.739e-23
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 212
            D LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  198 DSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.990e-19
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 179
            DPLGLA DPE  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  207 DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.875e-19
Identity = 46/70 (65.71%), Postives = 51/70 (72.86%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 209
            DPLGLADDP+ F ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN   HL DP  +N   A  T F P
Sbjct:   52 DPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.077e-17
Identity = 38/59 (64.41%), Postives = 48/59 (81.36%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 179
            +PLG   D ++  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  207 NPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.991e-16
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 179
            +PLG   D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  209 NPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.293e-14
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 179
            DPLG + DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  173 DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.293e-14
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 179
            DPLG + DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA HLADP +NN
Sbjct:  174 DPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
The following BLAST results are available for this feature:
BLAST of CX299891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2_DUNSA3.386e-2781.16Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE9.852e-2781.16Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE2.867e-2680.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO1.739e-2378.57Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB26_ARATH1.990e-1976.27Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_EUGGR9.875e-1965.71Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB13_SOLLC7.077e-1764.41Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA5.991e-1659.32Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU4.293e-1465.00Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC4.293e-1465.00Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07003F08SK NTLeaf1 Citrus clementina cDNA clone C07003F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299891 ID=CX299891; Name=CX299891; organism=Citrus clementina; type=EST; length=355bp
TTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAG
GTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTT
CTTTGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCG
ACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAAC
TTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGG
TTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTT
GAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAA
AAAAA
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