CX299917

Overview
NameCX299917
Unique NameCX299917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH1_TRIRP (Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.279e-51
Identity = 97/208 (46.63%), Postives = 139/208 (66.83%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE 624
            +LSCG+ TG+GA    A  + GS+V IFGLG++GLA AEGAR+ GA+RIIGVD++S +FE+ K+FGV EFVN K+  DK V Q+I +MTDGG D   EC G    +  A+ C   GWG  +++GV +            L+  + L G+ +G  K ++D+P ++++YM  ELEL+KF+TH + F EIN AFD ++KG+ +RC+I M E
Sbjct:  175 ILSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARMSGASRIIGVDLVSSRFELAKKFGVNEFVNPKD-HDKPVQQVIAEMTDGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPKKDDAFKTHPMNFLNE-RTLKGTFYGNYKPRTDLPNVVEQYMKGELELEKFITHSIPFSEINKAFDYMLKGESIRCIIRMEE 380          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH_MALDO (Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.888e-51
Identity = 99/208 (47.60%), Postives = 141/208 (67.79%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE 624
            LLSCG+STG+GA    A  + GSTV +FGLG++GLA AEGARL GA+RIIGVD+ S++FE  K+FGVTEFVN K   +K V ++I ++T+ G D   EC G    +  A+ C   GWG  +++GV    +         L+  + L G+ FG  K ++DIP ++++YM+KELEL+KF+TH++ F EIN AF+ ++KG+ LRC+I M E
Sbjct:  175 LLSCGISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARLSGASRIIGVDLHSDRFEEAKKFGVTEFVNPK-AHEKPVQEVIAELTNRGVDRSIECTGSTEAMISAFECVHDGWGVAVLVGVPHKDAVFKTHPVNFLNE-RTLKGTFFGNYKTRTDIPSVVEKYMNKELELEKFITHKVPFSEINKAFEYMLKGEGLRCIIRMEE 380          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADHL3_ARATH (Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.631e-51
Identity = 103/204 (50.49%), Postives = 138/204 (67.65%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LLSCGVSTGVGAAW  ANV+ G +  +FGLGS+GLAVAEGAR  GA+RIIGVD  + KFE GK  GVT+F+N K+   K V Q+I ++T GG DY FEC G   +++EA+     GWG T+++G+      L L   E L  G+ + GS+FGG K KS +P   ++ M   ++L+ F+T+E+ FE+IN AF LL  GK LRC++
Sbjct:  185 LLSCGVSTGVGAAWNIANVKEGKSTAVFGLGSVGLAVAEGARARGASRIIGVDANASKFEKGKLMGVTDFINPKDL-TKPVHQMIREITGGGVDYSFECTGNVDVLREAFLSTHVGWGSTVLVGIYPTPRTLPLHPME-LFDGRRITGSVFGGFKPKSQLPNFAQQCMKGVVKLEPFITNELPFEKINDAFQLLRDGKSLRCIL 386          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH_FRAAN (Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH PE=3 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.131e-50
Identity = 95/208 (45.67%), Postives = 141/208 (67.79%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE 624
            +LSCG+STG+GA       + GSTV +FGLG++GLA AEGAR+ GA+RIIGVD+ S +FE  K+FG+TEFVN K+   K V ++I ++T+GG D   EC G    +  A+ C   GWG  +++GV    +  +      L+  + L G+ FG  K ++DIP ++++YM+KELE+DKF+TH++ F +IN AFD ++KG+ +RC+I M E
Sbjct:  175 ILSCGISTGLGATLNVRKPKKGSTVAVFGLGAVGLAAAEGARMAGASRIIGVDLNSNRFEEAKKFGITEFVNPKD-HKKPVQEVIAELTNGGVDRSIECTGNIQAMIPAFECVHDGWGVAVLVGVPHKDAVFTTHPMNFLNE-RTLKGTFFGNYKPRTDIPSVVEKYMNKELEVDKFITHQLPFSQINKAFDYMLKGEGIRCIITMEE 380          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADHH_GADMO (Alcohol dehydrogenase class-3 chain H OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.131e-50
Identity = 92/204 (45.10%), Postives = 140/204 (68.63%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CG+STG GAA  TA VE GST  +FGLG++GLA   G ++ GATRIIGVD+  EKF     FG TE +N K+   + V +++++MTDGG DY FEC+G   +++ A   C KGWG+++++GV   G +++   F+++ +G++   + FGG K+   +P L++ YM+K+L++D+FVTH + F+ IN  FDL+  GK +RCV+
Sbjct:  172 LLGCGISTGYGAALNTAKVEPGSTCAVFGLGAVGLAAIMGCKVAGATRIIGVDINPEKFGKAAEFGATECLNPKDHA-RPVQEVLVEMTDGGVDYSFECIGNVEIMRSALEACHKGWGESVIIGVAGAGQEIATRPFQLV-TGRVWKATAFGGWKSVESVPKLVEDYMNKKLKVDEFVTHTLPFDSINEGFDLMHAGKSIRCVL 373          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH1_ARATH (Alcohol dehydrogenase class-P OS=Arabidopsis thaliana GN=ADH1 PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.131e-50
Identity = 97/207 (46.86%), Postives = 137/207 (66.18%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG 621
            ++SCG+STG+GA    A  + G +V IFGLG++GL  AEGAR+ GA+RIIGVD  S++F+  K FGVTE VN K+  DK + Q+I +MTDGG D   EC G    + +A+ C   GWG  +++GV              L+  + L G+ FG  K K+DIP ++++YM+KELEL+KF+TH + F EIN AFD ++KG+ +RC+I MG
Sbjct:  174 IVSCGLSTGLGATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQAKEFGVTECVNPKD-HDKPIQQVIAEMTDGGVDRSVECTGSVQAMIQAFECVHDGWGVAVLVGVPSKDDAFKTHPMNFLNE-RTLKGTFFGNYKPKTDIPGVVEKYMNKELELEKFITHTVPFSEINKAFDYMLKGESIRCIITMG 378          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH1_PEA (Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.477e-50
Identity = 96/208 (46.15%), Postives = 137/208 (65.87%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE 624
            +LSCG+ TG+GA    A  + GS+V IFGLG++GLA AEGAR+ GA+RIIGVD++S +FE+ K+FGV EFVN K   DK V Q+I +MT+GG D   EC G    +  A+ C   GWG  +++GV              L+  + L G+ +G  K ++D+P ++++YM  ELEL+KF+TH + F EIN AFD ++KG+ +RC+I M E
Sbjct:  175 ILSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKE-HDKPVQQVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPSKDDAFKTHPMNFLNE-RTLKGTFYGNYKPRTDLPNVVEKYMKGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIKMEE 380          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADHL_GADMO (Alcohol dehydrogenase class-3 chain L OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.929e-50
Identity = 94/204 (46.08%), Postives = 140/204 (68.63%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL C +STG GAA  TA VE GST  +FGLG++GLAV  G +  GA+RII +DV  +KF I K FG T+ VN K+   K V Q++++MTDGG DY FECVG  ++++ A   C KGWG ++++GV   G ++S   F+++ +G+   G+ FGG K+   +P L++ YM+K++++D+FVTH + FE+I+  FDL+  GK +R V+
Sbjct:  172 LLGCAISTGYGAALNTAKVEAGSTCAVFGLGALGLAVIMGCQAAGASRIIAIDVNPDKFRIAKEFGATDLVNPKD-HSKPVEQVLVEMTDGGVDYSFECVGNIAVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLV-TGRTWKGTAFGGYKSVESVPKLVEEYMNKKVKVDEFVTHTLPFEKIHEGFDLMGAGKSIRTVL 373          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADHX_HORSE (Alcohol dehydrogenase class-3 OS=Equus caballus GN=ADH5 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.298e-50
Identity = 94/204 (46.08%), Postives = 139/204 (68.14%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGVSTG GAA  TA VE GST  IFGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG +E +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G +++   F+++ +G+   G+ FGG K+   IP L+  YM K++++D+FVTH + F++IN AF+L+  GK +R V+
Sbjct:  171 LLGCGVSTGYGAAVNTAKVEPGSTCAIFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAKAKEFGASECINPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLV-TGRTWKGTAFGGWKSVESIPKLVSEYMSKKIKVDEFVTHSLSFDQINEAFELMHAGKSIRTVV 372          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH1_HORVU (Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.614e-50
Identity = 96/206 (46.60%), Postives = 140/206 (67.96%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM 618
            +LSCG+STG+GA+   A    GSTV IFGLG++GLA AEGAR+ GA+RIIGVD+ + +FE  ++FG TEFVN K+   K V Q++ DMT+GG D   EC G  + + +A+ C   GWG  +++GV    ++        L+  + L G+ FG  K ++D+P +++ YM KELE++KF+TH + F EIN+AFDL+ KG+ +RC+I M
Sbjct:  174 VLSCGISTGLGASINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNAVRFEEARKFGCTEFVNPKD-HTKPVQQVLADMTNGGVDRSVECTGNVNAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNE-RTLKGTFFGNFKPRTDLPNVVEMYMKKELEVEKFITHSVPFSEINTAFDLMAKGEGIRCIIRM 377          
The following BLAST results are available for this feature:
BLAST of CX299917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ADH1_TRIRP2.279e-5146.63Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH... [more]
ADH_MALDO3.888e-5147.60Alcohol dehydrogenase OS=Malus domestica GN=ADH PE... [more]
ADHL3_ARATH6.631e-5150.49Alcohol dehydrogenase-like 3 OS=Arabidopsis thalia... [more]
ADH_FRAAN1.131e-5045.67Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH ... [more]
ADHH_GADMO1.131e-5045.10Alcohol dehydrogenase class-3 chain H OS=Gadus mor... [more]
ADH1_ARATH1.131e-5046.86Alcohol dehydrogenase class-P OS=Arabidopsis thali... [more]
ADH1_PEA1.477e-5046.15Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1[more]
ADHL_GADMO1.929e-5046.08Alcohol dehydrogenase class-3 chain L OS=Gadus mor... [more]
ADHX_HORSE4.298e-5046.08Alcohol dehydrogenase class-3 OS=Equus caballus GN... [more]
ADH1_HORVU5.614e-5046.60Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004A03SK SaltLeaf1 Citrus clementina cDNA clone C07004A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299917 ID=CX299917; Name=CX299917; organism=Citrus clementina; type=EST; length=719bp
CTTCTAAGCTGTGGAGTATCAACAGGCGTGGGAGCTGCTTGGAGAACAGC
AAATGTAGAGGTTGGATCAACTGTTGTTATATTTGGGCTTGGTTCAATTG
GATTAGCGGTTGCAGAGGGAGCGAGATTATGTGGTGCTACAAGGATTATA
GGCGTGGATGTGATCTCGGAAAAATTTGAAATTGGAAAAAGGTTTGGAGT
TACAGAGTTTGTGAATTCTAAAAACTGTGGGGATAAATCTGTAAGCCAGA
TAATCATTGACATGACTGATGGGGGTGCTGATTACTGCTTTGAATGTGTT
GGTTTGGCATCCTTGGTGCAAGAAGCATATGCTTGTTGCCGAAAGGGTTG
GGGGAAAACAATTGTGTTGGGAGTGGACCAGCCGGGGTCACAGTTGAGCC
TGAGCTCTTTTGAGGTCCTTCACAGTGGAAAAATTCTGATGGGATCATTG
TTTGGAGGTCTCAAAGCTAAATCTGATATTCCTATTCTTTTGAAACGTTA
CATGGATAAGGAACTAGAGCTGGATAAGTTTGTCACTCATGAGATGAAGT
TTGAAGAAATCAATAGCGCGTTTGATTTACTTATAAAAGGAAAGTGTCTC
CGTTGTGTGATATGGATGGGCGAATAAGATTTCTTGCATTATTTTCTTGT
ATGTACTTTCTCCAATATTACCTCTCATATCTAAGCAATTGACCACCATT
TGTGATGGACATGTGTATA
back to top