CX299919

Overview
NameCX299919
Unique NameCX299919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF2_OLEEU (Profilin-2 OS=Olea europaea GN=PRO2 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.935e-47
Identity = 86/107 (80.37%), Postives = 96/107 (89.72%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            I+GHDGSVWAQS  FPQ KPEE+ GIM DFNEPG LAPTGL+LGGTKYMVIQGE GAVIRGKKG GG+TIKKT  AL+ GIY+EP+TPGQCNM+VERLGDYL++QGL
Sbjct:   28 IVGHDGSVWAQSATFPQFKPEEMNGIMTDFNEPGHLAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLLEQGL 134          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF2_PARJU (Profilin-2 OS=Parietaria judaica GN=PRO2 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.528e-47
Identity = 88/107 (82.24%), Postives = 98/107 (91.59%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            IIGHDGSVWAQS NFPQLKPEE+TGIMNDFNE G LAPTGL+LGGTKYMVIQGE GAVI GKKG GG T+KKT  A++IGIYDEPMTPGQCN++VERLGDYL++QG+
Sbjct:   26 IIGHDGSVWAQSANFPQLKPEEVTGIMNDFNEGGFLAPTGLFLGGTKYMVIQGESGAVI-GKKGSGGATLKKTGQAIVIGIYDEPMTPGQCNLVVERLGDYLLEQGM 131          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF1_OLEEU (Profilin-1 OS=Olea europaea GN=PRO1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.528e-47
Identity = 85/107 (79.44%), Postives = 96/107 (89.72%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            I+GHDGSVWAQS  FPQ KPEE+ GIM DFNEPG LAPTGL+LGGTKYMVIQGE GAVIRGKKG GG+TIKKT  AL+ GIY+EP+TPGQCNM+VERLGDYL++QG+
Sbjct:   28 IVGHDGSVWAQSATFPQFKPEEMNGIMTDFNEPGHLAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVEQGM 134          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF1_PHLPR (Profilin-1 OS=Phleum pratense GN=PRO1 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.301e-47
Identity = 83/107 (77.57%), Postives = 97/107 (90.65%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            I+GHDG+VWAQS +FPQ KPEEITGIM DF+EPG LAPTG+++ G KYMVIQGEPG VIRGKKG GG+TIKKT  AL++GIYDEPMTPGQCNM+VERLGDYL++QG+
Sbjct:   25 ILGHDGTVWAQSADFPQFKPEEITGIMKDFDEPGHLAPTGMFVAGAKYMVIQGEPGRVIRGKKGAGGITIKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQGM 131          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF1_MALDO (Profilin-1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.301e-47
Identity = 87/107 (81.31%), Postives = 96/107 (89.72%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            I+GHDGSVWA S  FP+ KPEEIT IM DF+EPG+LAPTGL+LGGTKYMVIQGE GAVIRGKKG GGVT+KKT  AL+ GIY+EP+TPGQCNMIVERLGDYLIDQGL
Sbjct:   25 ILGHDGSVWAHSSTFPKFKPEEITAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEGGAVIRGKKGSGGVTVKKTGQALVFGIYEEPLTPGQCNMIVERLGDYLIDQGL 131          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF_CROSA (Profilin OS=Crocus sativus PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.631e-47
Identity = 84/106 (79.25%), Postives = 96/106 (90.57%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            I+GHDGSVWAQS  FP+LKP EIT I+NDFNEPG+LAPTG+Y+ G KYMVIQGEPG VIRGKKG GGVTIKK++ ALI G+YDEPMTPGQCN++VERLGDYLI+QG
Sbjct:   25 ILGHDGSVWAQSAGFPELKPAEITAILNDFNEPGSLAPTGMYINGAKYMVIQGEPGVVIRGKKGSGGVTIKKSNMALIFGLYDEPMTPGQCNLVVERLGDYLIEQG 130          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF3_OLEEU (Profilin-3 OS=Olea europaea GN=PRO3 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.631e-47
Identity = 85/107 (79.44%), Postives = 95/107 (88.79%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            I+GHDGSVWAQS  FPQ KPEE+ GIM DFNEPG LAPTGL+LGGTKYMVIQGE GAVIRGKKG GG+TIKKT  AL+ GIY+EP+TPGQCNM+ ERLGDYL++QGL
Sbjct:   28 IVGHDGSVWAQSATFPQFKPEEMNGIMTDFNEPGHLAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVAERLGDYLLEQGL 134          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF1_HORVU (Profilin-1 OS=Hordeum vulgare GN=PRO1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.354e-47
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            I+GHDG VW QS NFPQ KPEEI GI+ DF+EPG LAPTGL+LGGTKYMVIQGEPG VIRGKKG GG+TIKKT   LI+GIYDEPMTPGQCN++VERLGDYL++QG
Sbjct:   25 ILGHDGRVWVQSPNFPQFKPEEIAGIIKDFDEPGHLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMPLILGIYDEPMTPGQCNLVVERLGDYLVEQG 130          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF3_MALDO (Profilin-3 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 9.605e-47
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            I+G DGSVW+QS +FP  KPEEI  I+ DF++PGTLAPTGL+LGGTKYMVIQGEPGAVIRGKKG GG+TIKKTS AL+IGIYDEP+TPGQCN++VERLGDYLI+QGL
Sbjct:   25 ILGQDGSVWSQSASFPAFKPEEIAAILKDFDQPGTLAPTGLFLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTSQALLIGIYDEPVTPGQCNIVVERLGDYLIEQGL 131          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF3_MAIZE (Profilin-3 OS=Zea mays GN=PRO3 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.638e-46
Identity = 84/107 (78.50%), Postives = 96/107 (89.72%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            I+GHDG+VWAQS  FPQ KPEE+T I+ DF+EPG LAP GL+LG TKYMVIQGEPGAVIRGKKG GG+T+KKT  AL+IGIYDEPMTPGQCNM+VERLGDYL++QGL
Sbjct:   25 IVGHDGAVWAQSTAFPQFKPEEMTNIIKDFDEPGFLAPIGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVIGIYDEPMTPGQCNMVVERLGDYLVEQGL 131          
The following BLAST results are available for this feature:
BLAST of CX299919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
PROF2_OLEEU1.935e-4780.37Profilin-2 OS=Olea europaea GN=PRO2 PE=1 SV=1[more]
PROF2_PARJU2.528e-4782.24Profilin-2 OS=Parietaria judaica GN=PRO2 PE=1 SV=1[more]
PROF1_OLEEU2.528e-4779.44Profilin-1 OS=Olea europaea GN=PRO1 PE=1 SV=1[more]
PROF1_PHLPR3.301e-4777.57Profilin-1 OS=Phleum pratense GN=PRO1 PE=1 SV=1[more]
PROF1_MALDO3.301e-4781.31Profilin-1 OS=Malus domestica PE=1 SV=1[more]
PROF_CROSA5.631e-4779.25Profilin OS=Crocus sativus PE=1 SV=1[more]
PROF3_OLEEU5.631e-4779.44Profilin-3 OS=Olea europaea GN=PRO3 PE=1 SV=1[more]
PROF1_HORVU7.354e-4779.25Profilin-1 OS=Hordeum vulgare GN=PRO1 PE=2 SV=1[more]
PROF3_MALDO9.605e-4779.44Profilin-3 OS=Malus domestica PE=1 SV=1[more]
PROF3_MAIZE1.638e-4678.50Profilin-3 OS=Zea mays GN=PRO3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07004A06SK SaltLeaf1 Citrus clementina cDNA clone C07004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299919 ID=CX299919; Name=CX299919; organism=Citrus clementina; type=EST; length=613bp
ATCATCGGCCACGACGGCAGCGTTTGGGCCCAGAGTGAAAACTTCCCTCA
GTTAAAACCTGAGGAAATAACTGGTATCATGAATGACTTTAATGAACCTG
GAACACTAGCACCAACTGGACTGTATCTTGGTGGCACAAAATATATGGTG
ATCCAGGGTGAGCCAGGTGCTGTCATCCGAGGGAAGAAGGGCCCTGGTGG
TGTTACCATCAAGAAGACCAGTGCGGCCTTAATCATTGGAATCTATGATG
AGCCGATGACCCCTGGGCAGTGCAACATGATTGTTGAAAGGCTTGGTGAT
TATCTCATTGATCAGGGTCTTTAGGTGGTTTGCATGTCCGCTAATTTGTT
TCATTTCTTGGCTTCCCTAAAAAGCTCGCACTGTTGAACTTCGGTGTAAT
AATATTACAGTATTCAAAGTTATGGGAACTGTGTGTGGAAAGGAAAGGTT
TGGTGCATGTGGAAGTTCTTGATATCATCTATTTGTAGTATTGTTATGGT
TGTCAAGGTACTTTACCAATCACTATTACAGTGGATCCTAATGGATGTGT
CAATTTGAGTTGTAAAACTTGTGAGATTCTTGTTTCTCAATGTATTTTGC
GTTGGTTGTTGAA
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