CX299921

Overview
NameCX299921
Unique NameCX299921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL8_RAT (60S ribosomal protein L8 OS=Rattus norvegicus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.870e-22
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  185 AYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
[Close]
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL8_PONAB (60S ribosomal protein L8 OS=Pongo abelii GN=RPL8 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.870e-22
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  185 AYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
[Close]
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL8_MOUSE (60S ribosomal protein L8 OS=Mus musculus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.870e-22
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  185 AYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
[Close]
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL8_ICTPU (60S ribosomal protein L8 OS=Ictalurus punctatus GN=rpl8 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.870e-22
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            AYHK++VKRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRD P G+KVGLI
Sbjct:  185 AYHKYKVKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDVPAGRKVGLI 238
[Close]
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL8_HUMAN (60S ribosomal protein L8 OS=Homo sapiens GN=RPL8 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.870e-22
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  185 AYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
[Close]
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL8_DANRE (60S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.870e-22
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  185 AYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
[Close]
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL8_BOVIN (60S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.870e-22
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  185 AYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
[Close]
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL8_DICDI (60S ribosomal protein L8 OS=Dictyostelium discoideum GN=rpl8 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.190e-22
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            A+HK+RVK+N WPKVRGVAMNPVEHPHGGGNHQH+GHA+T +RD P G+KVGLI
Sbjct:  186 AFHKYRVKKNNWPKVRGVAMNPVEHPHGGGNHQHVGHATTTKRDDPAGKKVGLI 239
[Close]
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL8_CAEEL (60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.190e-22
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            +YHK++ KRN WP+VRGVAMNPVEHPHGGGNHQHIGH STVRRDA  G+KVGLI
Sbjct:  185 SYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLI 238
[Close]
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL8_SPOFR (60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.212e-21
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            AYHK++VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGLI
Sbjct:  185 AYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238
The following BLAST results are available for this feature:
BLAST of CX299921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL8_RAT1.870e-2281.4860S ribosomal protein L8 OS=Rattus norvegicus GN=R... [more]
RL8_PONAB1.870e-2281.4860S ribosomal protein L8 OS=Pongo abelii GN=RPL8 P... [more]
RL8_MOUSE1.870e-2281.4860S ribosomal protein L8 OS=Mus musculus GN=Rpl8 P... [more]
RL8_ICTPU1.870e-2281.4860S ribosomal protein L8 OS=Ictalurus punctatus GN... [more]
RL8_HUMAN1.870e-2281.4860S ribosomal protein L8 OS=Homo sapiens GN=RPL8 P... [more]
RL8_DANRE1.870e-2281.4860S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE... [more]
RL8_BOVIN1.870e-2281.4860S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=... [more]
RL8_DICDI3.190e-2279.6360S ribosomal protein L8 OS=Dictyostelium discoide... [more]
RL8_CAEEL3.190e-2281.4860S ribosomal protein L8 OS=Caenorhabditis elegans... [more]
RL8_SPOFR1.212e-2181.4860S ribosomal protein L8 OS=Spodoptera frugiperda ... [more]

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Properties
Property NameValue
Genbank descriptionC07004A08SK SaltLeaf1 Citrus clementina cDNA clone C07004A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299921 ID=CX299921; Name=CX299921; organism=Citrus clementina; type=EST; length=401bp
AATGCTTATCACAAGTTCAGGGTGAAGAGGAACTGCTGGCCCAAGGTCCG
TGGTGTTGCCATGAACCCTGTTGAGCATCCCCATGGTGGTGGTAACCACC
AGCACATTGGGCATGCAAGTACGGTTCGCCGTGATGCACCCCCTGGCCAA
AAGGTTGGTCTTATTGCTGCTAGGAGGACTGGTCGTCTTAGAGGACAAGC
AGCTGCCACTGCTGCAAAGGCTGACAAGGCTTAGAGTTTCGCTTGAGCTC
ATTTTAATTTTGTTTTGTGCTGTTGAACATCTTCATATGGTTGTTATCTG
TTAGCATTAGATTTTGGTTTGCAATTTTGGAAGGTTACTAACTTCTTGTG
ATTAGTACATTGAAAGTGAGAGTATTTTGTTTTAAAAAAAAAAAAAAAAA
A
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