CX299921
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4) HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12 Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 Query: 1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 159 N +HK + + WP VRGVAMN V+HP GGG QH G ++ R+APPG+KVG Sbjct: 175 NKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVG 227
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METJA (50S ribosomal protein L2P OS=Methanocaldococcus jannaschii GN=rpl2p PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 3.908e-12 Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV-RRDAPPGQKVGLI 165 YH + K WP+VRGVAMN V+HP GGG HQH G +TV R+ PPG+KVG I Sbjct: 180 YHAMKAKAVKWPRVRGVAMNAVDHPFGGGRHQHTGKPTTVSRKKVPPGRKVGHI 233
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METTH (50S ribosomal protein L2P OS=Methanobacterium thermoautotrophicum GN=rpl2p PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.105e-12 Identity = 33/53 (62.26%), Postives = 36/53 (67.92%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 YH R K VRGVAMN V+HPHGGGN QH G +TV R APPG+KVG I Sbjct: 180 YHALRAKGKKSVTVRGVAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSI 232
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METPE (50S ribosomal protein L2P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl2p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12 Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 +HK + + WP+VRGVAMN ++HP GGG HQH G TV R PG+KVG + Sbjct: 177 FHKVKSQATYWPRVRGVAMNVIDHPFGGGGHQHTGRPKTVSRGTSPGRKVGSV 229
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_META3 (50S ribosomal protein L2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl2p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12 Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 YH + K WP+VRGVAMN V+HP GGGN QH G +T+ R PG+KVG I Sbjct: 180 YHAMKAKAVLWPRVRGVAMNAVDHPFGGGNTQHAGKPTTISRHTSPGRKVGHI 232
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL8_ENCCU (60S ribosomal protein L8 OS=Encephalitozoon cuniculi GN=RPL8 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 8.707e-12 Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 1 Query: 4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV-RRDAPPGQKVGLI 165 A++K + + + +P+VRGVAMNPVEH HGGGNHQH+G +TV ++D QK+GL+ Sbjct: 171 AHYKAKARGHVFPRVRGVAMNPVEHIHGGGNHQHVGKPTTVSKKDISQEQKIGLV 225
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.137e-11 Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 + +FR K +P VRGVA HPHGGG HQH+G +STV R+APPG KVG I Sbjct: 177 WRRFRSKGRKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRNAPPGAKVGSI 229
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11 Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1 Query: 1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 N ++K K WP VRGVAMN V+HP GGG QH G TV R+ PPG+KVG I Sbjct: 175 NKWYKMANKATKWPVVRGVAMNAVDHPFGGGGRQHPGRPKTVSRNTPPGRKVGSI 229
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METHJ (50S ribosomal protein L2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl2p PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11 Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 YHK + + WP+VRG AMN ++HP GGG HQH G TV R PG+KVG I Sbjct: 176 YHKMKNTASNWPRVRGFAMNVIDHPFGGGGHQHAGRPKTVSRGTSPGRKVGHI 228
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_PICTO (50S ribosomal protein L2P OS=Picrophilus torridus GN=rpl2p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.940e-11 Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1 Query: 46 VRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 159 VRGVAMN V HPHGGGNHQH+G STV R PPG+KVG Sbjct: 184 VRGVAMNAVNHPHGGGNHQHVGRPSTVGRGTPPGRKVG 221 The following BLAST results are available for this feature:
BLAST of CX299921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299921 ID=CX299921; Name=CX299921; organism=Citrus clementina; type=EST; length=401bpback to top |