CX299921

Overview
NameCX299921
Unique NameCX299921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 159
            N +HK + +   WP VRGVAMN V+HP GGG  QH G   ++ R+APPG+KVG
Sbjct:  175 NKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVG 227          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METJA (50S ribosomal protein L2P OS=Methanocaldococcus jannaschii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.908e-12
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV-RRDAPPGQKVGLI 165
            YH  + K   WP+VRGVAMN V+HP GGG HQH G  +TV R+  PPG+KVG I
Sbjct:  180 YHAMKAKAVKWPRVRGVAMNAVDHPFGGGRHQHTGKPTTVSRKKVPPGRKVGHI 233          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METTH (50S ribosomal protein L2P OS=Methanobacterium thermoautotrophicum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.105e-12
Identity = 33/53 (62.26%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            YH  R K      VRGVAMN V+HPHGGGN QH G  +TV R APPG+KVG I
Sbjct:  180 YHALRAKGKKSVTVRGVAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSI 232          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METPE (50S ribosomal protein L2P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            +HK + +   WP+VRGVAMN ++HP GGG HQH G   TV R   PG+KVG +
Sbjct:  177 FHKVKSQATYWPRVRGVAMNVIDHPFGGGGHQHTGRPKTVSRGTSPGRKVGSV 229          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_META3 (50S ribosomal protein L2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            YH  + K   WP+VRGVAMN V+HP GGGN QH G  +T+ R   PG+KVG I
Sbjct:  180 YHAMKAKAVLWPRVRGVAMNAVDHPFGGGNTQHAGKPTTISRHTSPGRKVGHI 232          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL8_ENCCU (60S ribosomal protein L8 OS=Encephalitozoon cuniculi GN=RPL8 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.707e-12
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV-RRDAPPGQKVGLI 165
            A++K + + + +P+VRGVAMNPVEH HGGGNHQH+G  +TV ++D    QK+GL+
Sbjct:  171 AHYKAKARGHVFPRVRGVAMNPVEHIHGGGNHQHVGKPTTVSKKDISQEQKIGLV 225          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.137e-11
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            + +FR K   +P VRGVA     HPHGGG HQH+G +STV R+APPG KVG I
Sbjct:  177 WRRFRSKGRKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRNAPPGAKVGSI 229          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            N ++K   K   WP VRGVAMN V+HP GGG  QH G   TV R+ PPG+KVG I
Sbjct:  175 NKWYKMANKATKWPVVRGVAMNAVDHPFGGGGRQHPGRPKTVSRNTPPGRKVGSI 229          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METHJ (50S ribosomal protein L2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            YHK +   + WP+VRG AMN ++HP GGG HQH G   TV R   PG+KVG I
Sbjct:  176 YHKMKNTASNWPRVRGFAMNVIDHPFGGGGHQHAGRPKTVSRGTSPGRKVGHI 228          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_PICTO (50S ribosomal protein L2P OS=Picrophilus torridus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.940e-11
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1
Query:   46 VRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 159
            VRGVAMN V HPHGGGNHQH+G  STV R  PPG+KVG
Sbjct:  184 VRGVAMNAVNHPHGGGNHQHVGRPSTVGRGTPPGRKVG 221          
The following BLAST results are available for this feature:
BLAST of CX299921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL2_HALMA2.993e-1254.7250S ribosomal protein L2P OS=Haloarcula marismortu... [more]
RL2_METJA3.908e-1259.2650S ribosomal protein L2P OS=Methanocaldococcus ja... [more]
RL2_METTH5.105e-1262.2650S ribosomal protein L2P OS=Methanobacterium ther... [more]
RL2_METPE6.667e-1252.8350S ribosomal protein L2P OS=Methanosphaerula palu... [more]
RL2_META36.667e-1256.6050S ribosomal protein L2P OS=Methanococcus aeolicu... [more]
RL8_ENCCU8.707e-1254.5560S ribosomal protein L8 OS=Encephalitozoon cunicu... [more]
RL2_CENSY1.137e-1158.4950S ribosomal protein L2P OS=Cenarchaeum symbiosum... [more]
RL2_UNCMA1.485e-1156.3650S ribosomal protein L2P OS=Uncultured methanogen... [more]
RL2_METHJ1.485e-1154.7250S ribosomal protein L2P OS=Methanospirillum hung... [more]
RL2_PICTO1.940e-1176.3250S ribosomal protein L2P OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionC07004A08SK SaltLeaf1 Citrus clementina cDNA clone C07004A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299921 ID=CX299921; Name=CX299921; organism=Citrus clementina; type=EST; length=401bp
AATGCTTATCACAAGTTCAGGGTGAAGAGGAACTGCTGGCCCAAGGTCCG
TGGTGTTGCCATGAACCCTGTTGAGCATCCCCATGGTGGTGGTAACCACC
AGCACATTGGGCATGCAAGTACGGTTCGCCGTGATGCACCCCCTGGCCAA
AAGGTTGGTCTTATTGCTGCTAGGAGGACTGGTCGTCTTAGAGGACAAGC
AGCTGCCACTGCTGCAAAGGCTGACAAGGCTTAGAGTTTCGCTTGAGCTC
ATTTTAATTTTGTTTTGTGCTGTTGAACATCTTCATATGGTTGTTATCTG
TTAGCATTAGATTTTGGTTTGCAATTTTGGAAGGTTACTAACTTCTTGTG
ATTAGTACATTGAAAGTGAGAGTATTTTGTTTTAAAAAAAAAAAAAAAAA
A
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