CX299921
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.940e-11 Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 + F+ K +P VRGVA HPHGGG HQH+G +STV RD PPG KVG I Sbjct: 178 WRNFKAKGKKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRDTPPGAKVGSI 230
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METST (50S ribosomal protein L2P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl2p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.940e-11 Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1 Query: 1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 N YH + K VRGVAMN V+HPHGGGN QH G +T+ R AP G+KVG I Sbjct: 178 NRYHALKAKGKKMMTVRGVAMNAVDHPHGGGNRQHPGRPTTISRHAPAGRKVGSI 232
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.940e-11 Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 YHK + + +P+V G+AMN V+HP GGGN +H G +TV R+APPG+KVG I Sbjct: 177 YHKMKARAAKYPRVSGIAMNVVDHPFGGGNRKHPGKPTTVSRNAPPGRKVGHI 229
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_THEON (50S ribosomal protein L2P OS=Thermococcus onnurineus (strain NA1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.321e-11 Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 1 Query: 4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 AY+ + + WPK RGV MN V HPHGG H HIG STV R APPG+KVG I Sbjct: 178 AYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_THEGJ (50S ribosomal protein L2P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl2p PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.321e-11 Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 1 Query: 4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 AY+ + + WPK RGV MN V HPHGG H HIG STV R APPG+KVG I Sbjct: 178 AYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_PYRKO (50S ribosomal protein L2P OS=Pyrococcus kodakaraensis GN=rpl2p PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.321e-11 Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 1 Query: 4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 AY+ + + WPK RGV MN V HPHGG H HIG STV R APPG+KVG I Sbjct: 178 AYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.371e-11 Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 1 Query: 1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 159 N HK R + WP+VRGVAMN ++HP GGG HQH G T+ R PG+ VG Sbjct: 174 NKSHKMRNTASNWPRVRGVAMNVIDHPFGGGGHQHPGRPKTIARGTSPGRTVG 226
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METMA (50S ribosomal protein L2P OS=Methanosarcina mazei GN=rpl2p PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.627e-11 Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 YHK + + +P+V VAMNP +HP GGG +H G +TV R+APPG+KVGLI Sbjct: 177 YHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.627e-11 Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 YHK + + +P+V VAMNP +HP GGG +H G +TV R+APPG+KVGLI Sbjct: 177 YHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229 The following BLAST results are available for this feature:
BLAST of CX299921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299921 ID=CX299921; Name=CX299921; organism=Citrus clementina; type=EST; length=401bpback to top |