CX299921

Overview
NameCX299921
Unique NameCX299921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.940e-11
Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            +  F+ K   +P VRGVA     HPHGGG HQH+G +STV RD PPG KVG I
Sbjct:  178 WRNFKAKGKKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRDTPPGAKVGSI 230          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METST (50S ribosomal protein L2P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.940e-11
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            N YH  + K      VRGVAMN V+HPHGGGN QH G  +T+ R AP G+KVG I
Sbjct:  178 NRYHALKAKGKKMMTVRGVAMNAVDHPHGGGNRQHPGRPTTISRHAPAGRKVGSI 232          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.940e-11
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            YHK + +   +P+V G+AMN V+HP GGGN +H G  +TV R+APPG+KVG I
Sbjct:  177 YHKMKARAAKYPRVSGIAMNVVDHPFGGGNRKHPGKPTTVSRNAPPGRKVGHI 229          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_THEON (50S ribosomal protein L2P OS=Thermococcus onnurineus (strain NA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.321e-11
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            AY+  + +   WPK RGV MN V HPHGG  H HIG  STV R APPG+KVG I
Sbjct:  178 AYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_THEGJ (50S ribosomal protein L2P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.321e-11
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            AY+  + +   WPK RGV MN V HPHGG  H HIG  STV R APPG+KVG I
Sbjct:  178 AYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_PYRKO (50S ribosomal protein L2P OS=Pyrococcus kodakaraensis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.321e-11
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            AY+  + +   WPK RGV MN V HPHGG  H HIG  STV R APPG+KVG I
Sbjct:  178 AYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.371e-11
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 1
Query:    1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 159
            N  HK R   + WP+VRGVAMN ++HP GGG HQH G   T+ R   PG+ VG
Sbjct:  174 NKSHKMRNTASNWPRVRGVAMNVIDHPFGGGGHQHPGRPKTIARGTSPGRTVG 226          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METMA (50S ribosomal protein L2P OS=Methanosarcina mazei GN=rpl2p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.627e-11
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            YHK + +   +P+V  VAMNP +HP GGG  +H G  +TV R+APPG+KVGLI
Sbjct:  177 YHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.627e-11
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            YHK + +   +P+V  VAMNP +HP GGG  +H G  +TV R+APPG+KVGLI
Sbjct:  177 YHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229          
The following BLAST results are available for this feature:
BLAST of CX299921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL2_NITMS1.940e-1156.6050S ribosomal protein L2P OS=Nitrosopumilus mariti... [more]
RL2_METST1.940e-1156.3650S ribosomal protein L2P OS=Methanosphaera stadtm... [more]
RL2_METBU1.940e-1154.7250S ribosomal protein L2P OS=Methanococcoides burt... [more]
RL2_THEON4.321e-1159.2650S ribosomal protein L2P OS=Thermococcus onnurine... [more]
RL2_THEGJ4.321e-1159.2650S ribosomal protein L2P OS=Thermococcus gammatol... [more]
RL2_PYRKO4.321e-1159.2650S ribosomal protein L2P OS=Pyrococcus kodakaraen... [more]
RL2_METB67.371e-1152.8350S ribosomal protein L2P OS=Methanoregula boonei ... [more]
RL2_METMA9.627e-1154.7250S ribosomal protein L2P OS=Methanosarcina mazei ... [more]
RL2_METAC9.627e-1154.7250S ribosomal protein L2P OS=Methanosarcina acetiv... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004A08SK SaltLeaf1 Citrus clementina cDNA clone C07004A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299921 ID=CX299921; Name=CX299921; organism=Citrus clementina; type=EST; length=401bp
AATGCTTATCACAAGTTCAGGGTGAAGAGGAACTGCTGGCCCAAGGTCCG
TGGTGTTGCCATGAACCCTGTTGAGCATCCCCATGGTGGTGGTAACCACC
AGCACATTGGGCATGCAAGTACGGTTCGCCGTGATGCACCCCCTGGCCAA
AAGGTTGGTCTTATTGCTGCTAGGAGGACTGGTCGTCTTAGAGGACAAGC
AGCTGCCACTGCTGCAAAGGCTGACAAGGCTTAGAGTTTCGCTTGAGCTC
ATTTTAATTTTGTTTTGTGCTGTTGAACATCTTCATATGGTTGTTATCTG
TTAGCATTAGATTTTGGTTTGCAATTTTGGAAGGTTACTAACTTCTTGTG
ATTAGTACATTGAAAGTGAGAGTATTTTGTTTTAAAAAAAAAAAAAAAAA
A
back to top