CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ACIB3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain AB307-0294) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 54/95 (56.84%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  L E+ L+++LTEPKNAL +QY+ LF+M NV L F + ALR +AK+A  +NTGARGLR+ILE++L E MY++P
Sbjct:  292 DLVKFGLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLP 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_YERPS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pseudotuberculosis GN=clpX PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 54/97 (55.67%), Postives = 77/97 (79.38%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPEF+GR P++ +L+ L+ED L+++L EPKNAL KQY+ LFS+  V+L F ++AL  IAKKA A+ TGARGLR+I+E +L + MY++P +
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGVLLDTMYDLPSM 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SINMW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Sinorhizobium medicae (strain WSM419) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 55/98 (56.12%), Postives = 78/98 (79.59%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P+L +L  L ED L+++L+EPKNAL KQY+RLF M +V+L+F E ALR IA++A  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  294 DLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIARRAIVRKTGARGLRSIMEKILLDTMFELPTLE 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHIME (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium meliloti GN=clpX PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 55/98 (56.12%), Postives = 78/98 (79.59%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P+L +L  L ED L+++L+EPKNAL KQY+RLF M +V+L+F E ALR IA++A  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  294 DLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIARRAIVRKTGARGLRSIMEKILLDTMFELPTLE 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BEII9 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 56/95 (58.95%), Postives = 75/95 (78.95%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++ +L  L E+ L K+LTEPKNAL KQY+RLF M N +L F ++AL V+AKKA  + TGARGLR+I+ESIL + M+++P
Sbjct:  291 DLLKFGLIPEFVGRLPVIATLEDLDEEALKKILTEPKNALVKQYQRLFEMENTELTFQDEALNVVAKKAIERKTGARGLRSIMESILLDTMFDLP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_VIBSL (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio splendidus (strain LGP32) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ YGLIPEF+GR P+  +LT L E+ L+++L EPKNAL KQY  LF + + +L F E ALR IAKKA  + TGARGLR+ILE +L E MYE+P
Sbjct:  296 DLVKYGLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDTELEFREDALRAIAKKAMNRKTGARGLRSILEGVLLETMYELP 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_THISH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI YGLIPEFVGR P++ +L  L ED L+++LTEPKNAL KQY +LF M  V + F E ALR +A KA  + TGARGLR ILE +L + MY++P  +
Sbjct:  294 DLIKYGLIPEFVGRLPVVATLEELDEDALIQILTEPKNALTKQYGKLFEMEGVDIEFREDALRAVAAKAMERKTGARGLRTILEQVLLDTMYDLPSTE 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SILST (ATP-dependent Clp protease ATP-binding subunit clpX OS=Silicibacter sp. (strain TM1040) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 56/99 (56.57%), Postives = 77/99 (77.78%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 371
            DL+ +GLIPEFVGR P+L +L  L ED L+ +LT+PKNAL KQY+RLF + + +L FT++AL  IAKKA  + TGARGLR+ILE IL + M+E+P +++
Sbjct:  292 DLLKFGLIPEFVGRLPVLATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTDEALSAIAKKAIERKTGARGLRSILEDILLDTMFELPGMES 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHILW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 56/98 (57.14%), Postives = 77/98 (78.57%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P+L +L  L ED L+++L+EPKNAL KQY+RLF M +V+L F E ALR IA+KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  294 DLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKTGARGLRSIMEKILLDTMFELPTLE 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHIEC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 56/98 (57.14%), Postives = 77/98 (78.57%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P+L +L  L ED L+++L+EPKNAL KQY+RLF M +V+L F E ALR IA+KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  294 DLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKTGARGLRSIMEKILLDTMFELPTLE 391          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_ACIB31.434e-2656.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERPS1.873e-2655.67ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SINMW1.873e-2656.12ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHIME1.873e-2656.12ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BEII91.873e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBSL2.446e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_THISH2.446e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SILST2.446e-2656.57ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHILW2.446e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHIEC2.446e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
back to top