CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PSYIN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Psychromonas ingrahamii (strain 37) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 55/98 (56.12%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI YGLIPEF+GR P++ +LT L E  LV++LT PKNA+ KQY  LF + NV+L F E AL  +A+KA  + TGARGLR+I+E +L + MY++P VK
Sbjct:  294 DLIKYGLIPEFIGRLPVVATLTELDEHALVEILTAPKNAITKQYAALFGLENVELEFRENALIAMAQKAMGRKTGARGLRSIVEEVLLDTMYDLPSVK 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PASMU (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pasteurella multocida GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 55/98 (56.12%), Postives = 77/98 (78.57%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P++  L  L E+ LVK+LTEPKNAL KQY+ LFS+ +V L F+ +AL  +AKKA A+ TGARGLR+I+E+IL + MY++P ++
Sbjct:  290 DLMKFGLIPEFIGRLPVVAPLAELDEEALVKILTEPKNALIKQYQALFSLEDVALEFSPEALTAMAKKALARKTGARGLRSIVEAILLDTMYDLPSLQ 387          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_NATTJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 56/97 (57.73%), Postives = 75/97 (77.32%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ +GLIPEFVGR P++ SL AL ED LV++L EPKNAL KQY++LF ++ V+L   E ALR IA++A  +NTGARGLRAI+E  L + MY++P +
Sbjct:  290 DLLKFGLIPEFVGRIPVISSLDALDEDALVRILVEPKNALVKQYQKLFEIDGVELEMQEDALRAIAREAIERNTGARGLRAIVEEHLNDIMYDLPSM 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MYCUA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mycobacterium ulcerans (strain Agy99) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+T L ++ LVK+L+EPKNAL KQY RLF M+ V+L FT+ AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYTRLFEMDGVELEFTDDALEAIADQAIHRGTGARGLRAIMEEVLLPVMYDIP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MYCS2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mycobacterium smegmatis GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 57/95 (60.00%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+T L +  LVK+L+EPKNAL KQY RLF M+ V+L FTE+AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVVASVTNLDKASLVKILSEPKNALVKQYVRLFEMDGVELEFTEEALEAIADQAIHRGTGARGLRAIMEEVLLPVMYDIP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MYCMM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+T L ++ LVK+L+EPKNAL KQY RLF M+ V+L FT+ AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYTRLFEMDGVELEFTDDALEAIADQAIHRGTGARGLRAIMEEVLLPVMYDIP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_METPB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 56/95 (58.95%), Postives = 75/95 (78.95%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P+L +L  L E+ L K+L EPKNAL KQY+RLF M NV+L F ++AL ++A+KA  + TGARGLR+ILE+IL + MY++P
Sbjct:  291 DLLKFGLIPEFVGRLPVLATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVELTFQDEALGLVARKAIERKTGARGLRSILETILLDTMYDLP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_METNO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 58/95 (61.05%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P+L +L  L E  L ++L EPKNAL KQY+RLF M NV L F E+AL ++A+KA  + TGARGLR+ILESIL E MY++P
Sbjct:  291 DLLKFGLIPEFVGRLPVLATLEDLDEIALKRILQEPKNALVKQYQRLFEMENVDLTFQEEALTLVARKAIERKTGARGLRSILESILLETMYDLP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_METFK (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 58/97 (59.79%), Postives = 71/97 (73.20%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPEFVGR P + +L +L ED LV +L EPKNAL KQY +LF M  V L F E ALR+IAKKA  + TGARGLR+I+E  L E MY++P +
Sbjct:  292 DLIKFGLIPEFVGRLPAIATLESLDEDALVTILVEPKNALTKQYIKLFKMEGVDLEFREAALRMIAKKALERKTGARGLRSIMEHALLEIMYDLPSI 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MANSM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mannheimia succiniciproducens (strain MBEL55E) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 55/98 (56.12%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI YGLIPEF+GR P++  L+ L E  LV++LTEPKNAL KQY+ LF + NV+L FT +AL  +AKKA  + TGARGLR+I+E  L + MY++P ++
Sbjct:  293 DLIKYGLIPEFIGRLPVVAPLSELDEKALVQILTEPKNALTKQYQALFGLENVELEFTPEALNAMAKKALERKTGARGLRSIVEGALLDTMYDLPSLE 390          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_PSYIN7.117e-2656.12ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PASMU7.117e-2656.12ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NATTJ7.117e-2657.73ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MYCUA7.117e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MYCS27.117e-2660.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MYCMM7.117e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METPB7.117e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METNO7.117e-2661.05ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METFK7.117e-2659.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MANSM7.117e-2656.12ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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