CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MYCBT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=clpX PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+T L ++ LVK+L+EPKNAL KQY RLF M+ V+L FT+ AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTDDALEAIADQAIHRGTGARGLRAIMEEVLLPVMYDIP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MYCBP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=clpX PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+T L ++ LVK+L+EPKNAL KQY RLF M+ V+L FT+ AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTDDALEAIADQAIHRGTGARGLRAIMEEVLLPVMYDIP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MYCBO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mycobacterium bovis GN=clpX PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+T L ++ LVK+L+EPKNAL KQY RLF M+ V+L FT+ AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTDDALEAIADQAIHRGTGARGLRAIMEEVLLPVMYDIP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_GEOUR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Geobacter uraniireducens (strain Rf4) GN=clpX PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 56/95 (58.95%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +G IPEFVGR P+L SLT L E+ +V++L EPKNAL KQY++LF M +VKL FT+ +L  IAK+A  + TGARGLR+ILE+ + + MYEIP
Sbjct:  291 DLLKFGFIPEFVGRLPVLASLTELDEEAMVQILKEPKNALVKQYQKLFEMEHVKLKFTDGSLVAIAKEALKRRTGARGLRSILENAMLDIMYEIP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ERWCT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Erwinia carotovora subsp. atroseptica GN=clpX PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 53/99 (53.54%), Postives = 77/99 (77.78%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 371
            DLI +GLIPEF+GR P++ +L  L+ED L+++L EPKNAL KQY+ LF++  V+L F ++AL  IAKKA  + TGARGLR+I+E+ L E MY++P +++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLRELSEDALIQILREPKNALTKQYQALFNLEGVELEFRDEALTAIAKKAMVRKTGARGLRSIVEAALLETMYDLPSLES 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_COXBU (ATP-dependent Clp protease ATP-binding subunit clpX OS=Coxiella burnetii GN=clpX PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 56/97 (57.73%), Postives = 73/97 (75.26%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI YGLIPEFVGR PI+ +L  L ED L+++LTEPKNAL KQY++LF    V++ F E AL+ IAK+A  + TGARGLR+I+E  L + MY++P V
Sbjct:  290 DLIKYGLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFREDALKAIAKRAIQQKTGARGLRSIVEHTLLDLMYDLPGV 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_COXBN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Coxiella burnetii (strain Dugway 5J108-111) GN=clpX PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 56/97 (57.73%), Postives = 73/97 (75.26%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI YGLIPEFVGR PI+ +L  L ED L+++LTEPKNAL KQY++LF    V++ F E AL+ IAK+A  + TGARGLR+I+E  L + MY++P V
Sbjct:  290 DLIKYGLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFREDALKAIAKRAIQQKTGARGLRSIVEHTLLDLMYDLPGV 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_COXB2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Coxiella burnetii (strain CbuG_Q212) GN=clpX PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 56/97 (57.73%), Postives = 73/97 (75.26%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI YGLIPEFVGR PI+ +L  L ED L+++LTEPKNAL KQY++LF    V++ F E AL+ IAK+A  + TGARGLR+I+E  L + MY++P V
Sbjct:  290 DLIKYGLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFREDALKAIAKRAIQQKTGARGLRSIVEHTLLDLMYDLPGV 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_COXB1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Coxiella burnetii (strain CbuK_Q154) GN=clpX PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 56/97 (57.73%), Postives = 73/97 (75.26%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI YGLIPEFVGR PI+ +L  L ED L+++LTEPKNAL KQY++LF    V++ F E AL+ IAK+A  + TGARGLR+I+E  L + MY++P V
Sbjct:  290 DLIKYGLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFREDALKAIAKRAIQQKTGARGLRSIVEHTLLDLMYDLPGV 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BART1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=clpX PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 57/95 (60.00%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR PI+ +L  L  + L+++L++PKNAL KQY+RLF M NV+L F E ALR IAKKA  + TGARGLR+I+E IL E M+E+P
Sbjct:  293 DLIKFGLIPEFIGRLPIVATLEDLDVNALMQILSQPKNALVKQYQRLFEMENVELAFHEDALRAIAKKAIERKTGARGLRSIMEKILLETMFELP 387          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_MYCBT1.214e-2558.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MYCBP1.214e-2558.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MYCBO1.214e-2558.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_GEOUR1.214e-2558.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ERWCT1.214e-2553.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_COXBU1.214e-2557.73ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_COXBN1.214e-2557.73ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_COXB21.214e-2557.73ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_COXB11.214e-2557.73ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BART11.214e-2560.00ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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