CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_XANP2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 56/98 (57.14%), Postives = 75/98 (76.53%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEF+GR P+L +L  L E+ L K+L+EPKNAL KQY+RLF M NV L   E+AL  IA+KA  + TGARGLR+I+ESIL + M+++P ++
Sbjct:  292 DLLKYGLIPEFIGRLPVLATLGDLDEEALKKILSEPKNALVKQYQRLFEMENVDLTIHEEALGAIARKAIERKTGARGLRSIMESILLDTMFDLPGLE 389          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_VIBFM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio fischeri (strain MJ11) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 54/95 (56.84%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P+  +LT L E+ LV++L++PKNAL KQY  LF +   +L F E AL+ IAKKA  + TGARGLR+ILE++L E MYE+P
Sbjct:  298 DLVKFGLIPEFIGRLPVTTTLTELDEEALVQILSQPKNALTKQYGALFDLEGAELEFREDALKAIAKKAMDRKTGARGLRSILEAVLLETMYELP 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_VIBF1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 54/95 (56.84%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P+  +LT L E+ LV++L++PKNAL KQY  LF +   +L F E AL+ IAKKA  + TGARGLR+ILE++L E MYE+P
Sbjct:  298 DLVKFGLIPEFIGRLPVTTTLTELDEEALVQILSQPKNALTKQYGALFDLEGAELEFREDALKAIAKKAMDRKTGARGLRSILEAVLLETMYELP 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_HAHCH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Hahella chejuensis (strain KCTC 2396) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 55/95 (57.89%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEFVGR P++ +L  L E  L+++LT+P+NAL KQY +LF M +V++ F E ALR IAKKA  + TGARGLR+ILE +L + MY+IP
Sbjct:  296 DLIKFGLIPEFVGRLPVIATLDELDEAALIQILTQPRNALTKQYSKLFEMESVEVDFREDALRSIAKKAMERKTGARGLRSILEQVLLKTMYDIP 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_COXBR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 56/97 (57.73%), Postives = 72/97 (74.23%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI YGLIPEFVGR PI+ +L  L ED L+++LTEPKNAL KQY++LF    V++ F E AL  IAK+A  + TGARGLR+I+E  L + MY++P V
Sbjct:  290 DLIKYGLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFREDALNAIAKRAIQQKTGARGLRSIVEHTLLDLMYDLPGV 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_COREF (ATP-dependent Clp protease ATP-binding subunit clpX OS=Corynebacterium efficiens GN=clpX PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 362
            DL+ +GLIPEF+GR P++ ++  L ++ LVKVLTEP+N+L KQYKRLF M++  L FT+ AL  IA  A  + TGARGLRAILE IL   MY+IPD
Sbjct:  299 DLVKFGLIPEFIGRLPVVATVANLDQESLVKVLTEPRNSLVKQYKRLFEMDDTLLTFTDDALEAIADLALERKTGARGLRAILEEILVPIMYDIPD 394          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOAB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium acetobutylicum GN=clpX PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 57/101 (56.44%), Postives = 80/101 (79.21%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP---DVK 368
            DL+ +GLIPEF+GR PI+V+L +L +  LVKVL+EPKNAL KQY++L  M+NV+L F + AL+ IA +A +++TGARGLRAI+E I+ + M++IP   DVK
Sbjct:  289 DLLKFGLIPEFIGRLPIIVTLNSLDQGALVKVLSEPKNALVKQYEKLLQMDNVELEFKDGALKAIASEAISRSTGARGLRAIVEDIMKDIMFDIPSREDVK 389          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ALHEH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGR P++ +L  L E  LV++L+ PKNAL KQY++LF M  V+L F E ALR +A+KA  + TGARGLR ILE +L + MY++P ++
Sbjct:  294 DLVKYGLIPEFVGRLPVVATLEELDEQALVEILSAPKNALVKQYQKLFEMEGVELEFREDALRAVARKAMDRKTGARGLRTILEHVLLDTMYDLPSME 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SPHAL (ATP-dependent Clp protease ATP-binding subunit clpX OS=Sphingopyxis alaskensis GN=clpX PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 55/97 (56.70%), Postives = 74/97 (76.29%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ +GLIPEFVGR P++ +L  L  D LVK+L EPKNAL KQYK+LF +  V L FT+ AL  +AKKA  + TGARGLR+I+E+IL + M+++PD+
Sbjct:  292 DLLKFGLIPEFVGRLPVIATLEDLDVDALVKILGEPKNALVKQYKKLFDLEEVALTFTDDALVAVAKKAIERKTGARGLRSIVEAILLDTMFDLPDL 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHOSR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodococcus sp. (strain RHA1) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+T L ++ LV++L+EPKNAL KQY RLF M+ V+L FT  AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVVASVTNLDKESLVQILSEPKNALVKQYNRLFDMDGVELEFTTDALEAIADQAILRGTGARGLRAIMEEVLLPVMYDIP 388          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_XANP22.071e-2557.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBFM2.071e-2556.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBF12.071e-2556.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_HAHCH2.071e-2557.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_COXBR2.071e-2557.73ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_COREF2.071e-2558.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOAB2.071e-2556.44ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ALHEH2.071e-2555.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SPHAL2.705e-2556.70ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOSR2.705e-2557.89ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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