CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LISMO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Listeria monocytogenes GN=clpX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  L E  LV +LTEPKNAL KQYKR+  +++V+L F   AL  IAK+A  + TGARGLR+I+E I+ E M+EIP
Sbjct:  288 DLLKFGLIPEFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEAIERKTGARGLRSIIEQIMLEVMFEIP 382
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LISMH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  L E  LV +LTEPKNAL KQYKR+  +++V+L F   AL  IAK+A  + TGARGLR+I+E I+ E M+EIP
Sbjct:  288 DLLKFGLIPEFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEAIERKTGARGLRSIIEQIMLEVMFEIP 382
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LISMF (ATP-dependent Clp protease ATP-binding subunit clpX OS=Listeria monocytogenes serotype 4b (strain F2365) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  L E  LV +LTEPKNAL KQYKR+  +++V+L F   AL  IAK+A  + TGARGLR+I+E I+ E M+EIP
Sbjct:  288 DLLKFGLIPEFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEAIERKTGARGLRSIIEQIMLEVMFEIP 382
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LISMC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  L E  LV +LTEPKNAL KQYKR+  +++V+L F   AL  IAK+A  + TGARGLR+I+E I+ E M+EIP
Sbjct:  288 DLLKFGLIPEFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEAIERKTGARGLRSIIEQIMLEVMFEIP 382
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LISIN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Listeria innocua GN=clpX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  L E  LV +LTEPKNAL KQYKR+  +++V+L F   AL  IAK+A  + TGARGLR+I+E I+ E M+EIP
Sbjct:  288 DLLKFGLIPEFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEAIERKTGARGLRSIIEQIMLEVMFEIP 382
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LEPCP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 53/95 (55.79%), Postives = 70/95 (73.68%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +G+IPE VGR P++ +L  LTED LV++LTEPKNAL KQY+RLF M+ V+L      L  IA+KA  + TGARGLR+I+E  L + M+E+P
Sbjct:  297 DLIKFGIIPELVGRLPVIATLGELTEDALVQILTEPKNALLKQYQRLFGMDGVELEIRPSGLAAIAQKALKRKTGARGLRSIVEQALMDTMFELP 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LEPBP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR PI+ +L  LT + L  + TEPKN+L KQY+++F + NVKL FTE A+  IA+ A  + +GARGLRAI+E I+ E M++IP  K
Sbjct:  299 DLMKFGLIPEFIGRLPIIATLDELTIESLKSIFTEPKNSLLKQYQKMFDIENVKLKFTESAIEAIAQTAIKRESGARGLRAIVEEIMMELMFQIPSRK 396
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LEPBA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR PI+ +L  LT + L  + TEPKN+L KQY+++F + NVKL FTE A+  IA+ A  + +GARGLRAI+E I+ E M++IP  K
Sbjct:  299 DLMKFGLIPEFIGRLPIIATLDELTIESLKSIFTEPKNSLLKQYQKMFDIENVKLKFTESAIEAIAQTAIKRESGARGLRAIVEEIMMELMFQIPSRK 396
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_DELAS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 54/96 (56.25%), Postives = 70/96 (72.92%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 362
            DLI +G+IPE VGR P++ +L  L ED LV++LTEPKNAL KQY +L +M  V+L     AL+ IA+KA A+ TGARGLR+ILE  L   MYE+P+
Sbjct:  294 DLIKFGIIPELVGRMPVVTALAELGEDALVQILTEPKNALVKQYSKLLAMEGVELEIRPAALKAIARKALARKTGARGLRSILEQSLIGTMYELPN 389
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BEUC1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 49/95 (51.58%), Postives = 73/95 (76.84%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL  YGLIPEF+GR P++ ++T L ++ LV++LTEPKNAL +QY+R+F ++ V+L FT+ A+  +A +A  + TGARGLRAILE +L   M+++P
Sbjct:  291 DLQKYGLIPEFIGRLPVVATVTKLDQEALVRILTEPKNALVRQYQRMFEIDGVELEFTDDAIESVADQALLRGTGARGLRAILEEVLMPVMFDVP 385
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_LISMO8.700e-2455.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LISMH8.700e-2455.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LISMF8.700e-2455.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LISMC8.700e-2455.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LISIN8.700e-2455.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LEPCP8.700e-2455.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LEPBP8.700e-2453.06ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LEPBA8.700e-2453.06ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DELAS8.700e-2456.25ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BEUC18.700e-2451.58ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
back to top