CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BACP2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bacillus pumilus (strain SAFR-032) GN=clpX PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23
Identity = 50/95 (52.63%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ SL  L E  LV++LT+PKNAL KQY ++  +++V+L F E AL  IAKKA  + TGARGLR+I+E I+ + M+++P
Sbjct:  288 DLLRFGLIPEFIGRLPVIASLEPLDEKALVEILTKPKNALVKQYTKMLELDDVELEFEEDALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLP 382
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BACLD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=clpX PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23
Identity = 50/95 (52.63%), Postives = 74/95 (77.89%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR PI+ SL  L E  LV++LT+PKNAL KQY+++  +++V+L F ++AL  IAKKA  + TGARGLR+I+E I+ + M+++P
Sbjct:  288 DLLRFGLIPEFIGRLPIIASLEPLDEKALVEILTKPKNALVKQYRKMLELDDVELVFEDEALTEIAKKAIERKTGARGLRSIIEGIMLDVMFDLP 382
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_STRGG (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=clpX PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 50/98 (51.02%), Postives = 71/98 (72.45%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +G+IPEF+GR P+L S+  L  + L+++L EP+NAL KQY+RLF ++ V+L F  +AL  IA +A  + TGARGLRAI+E +L   MYE+P  K
Sbjct:  295 DLVKFGMIPEFIGRLPVLTSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQSVMYEVPSRK 392
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PELPB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL  YGLIPEF+GR P++ +L  L E  L  +L EPKNA+ KQYK+LF M+ V+L FTE+AL  + K A  + TGAR LR++LE+++ + M+EIP +K
Sbjct:  310 DLHEYGLIPEFIGRLPVISTLEMLDEKALRNILVEPKNAITKQYKKLFEMDGVELEFTEEALDKVVKIAIERGTGARALRSVLENVMIDIMFEIPSMK 407
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURTA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=clpX PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY++LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPTLK 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURPS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia pseudomallei GN=clpX PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY++LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPTLK 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURP6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia pseudomallei (strain 668) GN=clpX PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY++LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPTLK 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURP0 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia pseudomallei (strain 1106a) GN=clpX PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY++LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPTLK 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURMS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia mallei (strain SAVP1) GN=clpX PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY++LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPTLK 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURMA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia mallei GN=clpX PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY++LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPTLK 391
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_BACP22.531e-2352.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BACLD2.531e-2352.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STRGG3.306e-2351.02ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PELPB3.306e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURTA3.306e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURPS3.306e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURP63.306e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURP03.306e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURMS3.306e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURMA3.306e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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