CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHOPT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodopseudomonas palustris (strain TIE-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 57/98 (58.16%), Postives = 77/98 (78.57%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGR P++ +L  L E+ L K+LT+PKNAL KQY+RLF M NV+L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  291 DLLKYGLIPEFVGRLPVVATLEDLDENSLKKILTDPKNALVKQYQRLFEMENVELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHOPA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodopseudomonas palustris GN=clpX PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 57/98 (58.16%), Postives = 77/98 (78.57%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGR P++ +L  L E+ L K+LT+PKNAL KQY+RLF M NV+L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  291 DLLKYGLIPEFVGRLPVVATLEDLDENSLKKILTDPKNALVKQYQRLFEMENVELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHIL3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 56/98 (57.14%), Postives = 78/98 (79.59%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P+L +L  L ED L+++L+EPKNAL KQY+RLF M +V+L+F E ALR IA+KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  294 DLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELNFHEDALREIARKAIVRKTGARGLRSIMEKILLDTMFELPTLE 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_DICTD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 55/97 (56.70%), Postives = 78/97 (80.41%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +G+IPEFVGRFP++  L  L+E+ L+K+LTEPKNAL KQYK L SM  V+++FT++AL+ I K+A  K TGARGLRA++E ++ + MYE+P++
Sbjct:  287 DLIKFGMIPEFVGRFPVVAVLEPLSEEALLKILTEPKNALVKQYKALLSMEGVEINFTDEALKAIVKEAIDKATGARGLRAVMEELMLDLMYELPNL 383          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOBB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 57/95 (60.00%), Postives = 77/95 (81.05%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR PILV+L +L +D L+ +LT+PKNAL KQYK+LF +++V+L F  +AL  IA++A  + TGARGLRAI+E ++TE MYEIP
Sbjct:  288 DLLKFGLIPEFVGRLPILVTLESLDKDALINILTKPKNALVKQYKKLFELDDVELEFNNEALTSIAEEAIERKTGARGLRAIIEEMMTEIMYEIP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOBA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 57/95 (60.00%), Postives = 77/95 (81.05%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR PILV+L +L +D L+ +LT+PKNAL KQYK+LF +++V+L F  +AL  IA++A  + TGARGLRAI+E ++TE MYEIP
Sbjct:  288 DLLKFGLIPEFVGRLPILVTLESLDKDALINILTKPKNALVKQYKKLFELDDVELEFNNEALTSIAEEAIERKTGARGLRAIIEEMMTEIMYEIP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOTH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 57/95 (60.00%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++V+L +L  + LVK+LTEPKNAL KQY++LF M++V L F ++A+  IA KA  +NTGARGLRAILE I+ + MY+IP
Sbjct:  289 DLLKFGLIPEFVGRLPVIVTLHSLDREALVKILTEPKNALVKQYQKLFEMDDVILEFEKEAIEAIADKAIERNTGARGLRAILEEIMLDVMYDIP 383          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOPS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium perfringens (strain SM101 / Type A) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 57/95 (60.00%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P+LV+L AL  + LV +LT+PKNAL KQYK+LF ++NVKL FTE+AL+ IA +A  + TGARGLRAI+E  + + M++IP
Sbjct:  291 DLLKFGLIPEFVGRLPVLVTLEALDNEALVSILTKPKNALVKQYKKLFELDNVKLDFTEEALKAIADEAINRKTGARGLRAIVEETMMDIMFDIP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOPE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium perfringens GN=clpX PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 57/95 (60.00%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P+LV+L AL  + LV +LT+PKNAL KQYK+LF ++NVKL FTE+AL+ IA +A  + TGARGLRAI+E  + + M++IP
Sbjct:  291 DLLKFGLIPEFVGRLPVLVTLEALDNEALVSILTKPKNALVKQYKKLFELDNVKLDFTEEALKAIADEAINRKTGARGLRAIVEETMMDIMFDIP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOP1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 57/95 (60.00%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P+LV+L AL  + LV +LT+PKNAL KQYK+LF ++NVKL FTE+AL+ IA +A  + TGARGLRAI+E  + + M++IP
Sbjct:  291 DLLKFGLIPEFVGRLPVLVTLEALDNEALVSILTKPKNALVKQYKKLFELDNVKLDFTEEALKAIADEAINRKTGARGLRAIVEETMMDIMFDIP 385          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_RHOPT1.098e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOPA1.098e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHIL31.098e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DICTD1.098e-2656.70ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOBB1.098e-2660.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOBA1.098e-2660.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOTH1.434e-2660.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOPS1.434e-2660.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOPE1.434e-2660.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOP11.434e-2660.00ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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