CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_THEYD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=clpX PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27
Identity = 59/95 (62.11%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI YG+IPEFVGRFP++ +L  L ED L+++LT+PKNAL KQY++LFS++ VKL FT+ ALR IAKKA  + TGAR LR+ILE I+ + MY IP
Sbjct:  282 DLIKYGMIPEFVGRFPVVATLNQLDEDALIEILTKPKNALVKQYQKLFSIDGVKLTFTDDALRAIAKKAIERKTGARALRSILEDIMLDVMYLIP 376          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHEDO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=clpX PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27
Identity = 57/98 (58.16%), Postives = 76/98 (77.55%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEF+GR P++ +LT L E  L+++L++PKNAL KQY  LF M NV+L F E AL+ IAKKA ++ TGARGLR+I+E IL + MY++P VK
Sbjct:  295 DLVKYGLIPEFIGRLPVVATLTELDESALIQILSQPKNALTKQYGALFEMENVELEFREDALKAIAKKAMSRKTGARGLRSIVEGILLDTMYDLPTVK 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PSYCK (ATP-dependent Clp protease ATP-binding subunit clpX OS=Psychrobacter cryohalolentis (strain K5) GN=clpX PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27
Identity = 60/98 (61.22%), Postives = 75/98 (76.53%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P+L +LT L ED LV++LTEPKNAL KQYK LF M    + FT++AL  IAKKA A+ TGARGLR+I+E+ L E MYE+P +K
Sbjct:  306 DLIKFGLIPELIGRLPVLAALTELDEDALVQILTEPKNALVKQYKYLFDMEGADITFTKEALDAIAKKAMARKTGARGLRSIVENALLETMYELPSMK 403          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PSYA2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=clpX PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27
Identity = 60/98 (61.22%), Postives = 75/98 (76.53%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P+L +LT L ED LV++LTEPKNAL KQYK LF M    + FT++AL  IAKKA A+ TGARGLR+I+E+ L E MYE+P +K
Sbjct:  306 DLIKFGLIPELIGRLPVLAALTELDEDALVQILTEPKNALVKQYKYLFDMEGADITFTKEALDAIAKKAMARKTGARGLRSIVENALLETMYELPSMK 403          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MESSB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mesorhizobium sp. (strain BNC1) GN=clpX PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27
Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR PIL +L  L E+ LV++LTEPKNAL KQY+RLF M NV+L F E ALR IA+KA  + TGARGLR+I+E+IL + M+E+P
Sbjct:  293 DLLKFGLIPEFVGRLPILATLEDLDEEALVQILTEPKNALVKQYQRLFEMENVELTFHENALRAIARKAIERKTGARGLRSIMEAILLDTMFELP 387          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOTE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium tetani GN=clpX PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27
Identity = 58/95 (61.05%), Postives = 78/95 (82.11%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR PI V+L+AL  D LV++LTEPKNAL KQYK+LF M+NV L F E+AL+ IA++A  ++TGARGLR+I+E I+ + M+EIP
Sbjct:  290 DLLKFGLIPEFIGRLPITVTLSALDRDALVEILTEPKNALVKQYKKLFEMDNVHLEFKEEALKAIAEEAIRRSTGARGLRSIIEEIMKDIMFEIP 384          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_HAES2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Haemophilus somnus (strain 2336) GN=clpX PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.212e-27
Identity = 55/98 (56.12%), Postives = 80/98 (81.63%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P++  L+ L E+ LVK+LTEPKNAL KQY+ LFS+ N++L FT++AL  +AKKA A+ TGARGLR+I+E++L + MY++P ++
Sbjct:  293 DLMKFGLIPEFIGRLPVIAPLSELDEEALVKILTEPKNALTKQYQVLFSLENIELEFTQEALIAMAKKALARKTGARGLRSIVETLLLDTMYDLPSIE 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_HAES1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Haemophilus somnus (strain 129Pt) GN=clpX PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.212e-27
Identity = 55/98 (56.12%), Postives = 80/98 (81.63%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P++  L+ L E+ LVK+LTEPKNAL KQY+ LFS+ N++L FT++AL  +AKKA A+ TGARGLR+I+E++L + MY++P ++
Sbjct:  293 DLMKFGLIPEFIGRLPVIAPLSELDEEALVKILTEPKNALTKQYQVLFSLENIELEFTQEALIAMAKKALARKTGARGLRSIVETLLLDTMYDLPSIE 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOB8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=clpX PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.212e-27
Identity = 58/95 (61.05%), Postives = 79/95 (83.16%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR PILV+L +L ++ L+++LT+PKNAL KQYK+LF +++VKL F EK+L  IA++A ++ TGARGLRAI+E I+ E MYEIP
Sbjct:  288 DLLKFGLIPEFVGRLPILVTLESLDKEALIQILTKPKNALVKQYKKLFELDDVKLEFDEKSLIAIAEEAISRQTGARGLRAIIEDIMNEIMYEIP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PARL1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=clpX PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 57/98 (58.16%), Postives = 79/98 (80.61%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P+L +L  L E+ L+ +LT+PKNAL KQY+RLF M NV+L F+E+ALR +++KA  + TGARGLR+ILESIL + M+E+P ++
Sbjct:  291 DLLKFGLIPEFVGRMPVLATLEDLDEEALLTILTQPKNALVKQYERLFEMENVRLTFSEEALRAVSRKAIERKTGARGLRSILESILLDTMFELPTLE 388          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_THEYD1.694e-2762.11ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEDO1.694e-2758.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSYCK1.694e-2761.22ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSYA21.694e-2761.22ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MESSB1.694e-2763.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOTE1.694e-2761.05ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_HAES22.212e-2756.12ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_HAES12.212e-2756.12ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOB82.212e-2761.05ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PARL12.890e-2758.16ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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