CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_VIBCM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio cholerae serotype O1 (strain M66-2) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEF+GR P+  +LT L E  L+++L EPKNAL KQY  LF + NV L F E AL+ IA KA  + TGARGLR+ILE++L E MYE+P ++
Sbjct:  296 DLVKYGLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAIAAKAMKRKTGARGLRSILEAVLLETMYELPSME 393          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_VIBCH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio cholerae GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEF+GR P+  +LT L E  L+++L EPKNAL KQY  LF + NV L F E AL+ IA KA  + TGARGLR+ILE++L E MYE+P ++
Sbjct:  296 DLVKYGLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAIAAKAMKRKTGARGLRSILEAVLLETMYELPSME 393          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_VIBC3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEF+GR P+  +LT L E  L+++L EPKNAL KQY  LF + NV L F E AL+ IA KA  + TGARGLR+ILE++L E MYE+P ++
Sbjct:  296 DLVKYGLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAIAAKAMKRKTGARGLRSILEAVLLETMYELPSME 393          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHORT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 58/98 (59.18%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGR P+L +L  L ED LV +LT PKNAL KQY+RLF M + +L F E ALR IA KA A+ TGARGLR+I+E IL + M+++P ++
Sbjct:  291 DLLKYGLIPEFVGRLPVLATLDDLDEDALVDILTTPKNALVKQYQRLFEMESTQLSFKEDALRCIALKAIARKTGARGLRSIMEGILLDTMFDLPGME 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHOE4 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 56/95 (58.95%), Postives = 75/95 (78.95%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+T L ++ LV++L+EPKNAL KQY+RLF M+ V+L FTE+AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPMIASVTNLDKESLVQILSEPKNALVKQYRRLFDMDGVELEFTEEALDAIADQAILRGTGARGLRAIMEEVLLPVMYDIP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PSEPW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas putida (strain W619) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 57/98 (58.16%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P+L +L  L E  L+++LTEPKNAL KQY RLF M +V L F   AL+ +A+KA  + TGARGLR+ILE +L + MYEIP  K
Sbjct:  295 DLVKFGLIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYARLFEMESVDLEFRSDALKAVARKALERKTGARGLRSILEGVLLDTMYEIPSQK 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_OLICO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGR P++ +L  L E  L K+L EPKNAL KQY+RLF M NV+L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  291 DLLKYGLIPEFVGRLPVVATLEDLDEASLKKILVEPKNALVKQYQRLFEMENVELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_METSB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 55/95 (57.89%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++ +L  L E+ L K+LTEPKNAL KQY+RLF M N +L F ++AL V+AKKA  + TGARGLR+I+E IL + M+++P
Sbjct:  291 DLLKFGLIPEFVGRLPVIATLEDLDEEALKKILTEPKNALVKQYQRLFEMENTELSFQDEALNVVAKKAIERRTGARGLRSIMEGILLDTMFDLP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_METS4 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium sp. (strain 4-46) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 58/95 (61.05%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P+L +L  L E  L ++L EPKNAL KQY+RLF M NV L F E+AL ++A+KA  + TGARGLR+ILESIL E MY++P
Sbjct:  291 DLLKFGLIPEFVGRLPVLATLEDLDETALKRILQEPKNALVKQYQRLFEMENVDLTFQEEALTLVARKAIERKTGARGLRSILESILLETMYDLP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_EHRCR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Ehrlichia chaffeensis (strain Arkansas) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 56/95 (58.95%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++ SL  L E  L ++L EPKN+L KQYK+LF M+N+ L F + AL VIAKKA  + TGARGLRAILE++L + M+E P
Sbjct:  284 DLVKFGLIPEFVGRIPVITSLGELDESTLCRILVEPKNSLVKQYKKLFEMDNINLQFDDSALSVIAKKAAVRKTGARGLRAILEALLLDLMFESP 378          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_VIBCM4.173e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBCH4.173e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBC34.173e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHORT4.173e-2659.18ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOE44.173e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSEPW4.173e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_OLICO4.173e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METSB4.173e-2657.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METS44.173e-2661.05ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_EHRCR4.173e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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