CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_DESHY (ATP-dependent Clp protease ATP-binding subunit clpX OS=Desulfitobacterium hafniense (strain Y51) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 55/95 (57.89%), Postives = 75/95 (78.95%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++V L AL E+ LV++LTEPKNAL KQY++L  ++ V L F E+AL+ IA++A  +NTGARGLRAI+E I+   MY++P
Sbjct:  289 DLLKFGLIPEFVGRLPVMVKLDALDEEALVRILTEPKNALVKQYEKLLELDGVALEFKEEALKAIAEEAIRRNTGARGLRAIVEEIMQNVMYDLP 383
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_DESHD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 55/95 (57.89%), Postives = 75/95 (78.95%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++V L AL E+ LV++LTEPKNAL KQY++L  ++ V L F E+AL+ IA++A  +NTGARGLRAI+E I+   MY++P
Sbjct:  289 DLLKFGLIPEFVGRLPVMVKLDALDEEALVRILTEPKNALVKQYEKLLELDGVALEFKEEALKAIAEEAIRRNTGARGLRAIVEEIMQNVMYDLP 383
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BRUO2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P++ +L  L  D LV++LTEPKNAL KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  293 DLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BRUME (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella melitensis GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P++ +L  L  D LV++LTEPKNAL KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  293 DLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BRUMB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P++ +L  L  D LV++LTEPKNAL KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  293 DLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BRUAB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella abortus GN=clpX PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P++ +L  L  D LV++LTEPKNAL KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  293 DLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BRUA2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella abortus (strain 2308) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P++ +L  L  D LV++LTEPKNAL KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  293 DLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BRUA1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella abortus (strain S19) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P++ +L  L  D LV++LTEPKNAL KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  293 DLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_AGRT5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 55/98 (56.12%), Postives = 77/98 (78.57%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P+L +L  L ED L+++L+EPKNAL KQY+RLF M +V+L F E ALR IA++A  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  294 DLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARRAITRKTGARGLRSIMEKILLDTMFELPTLE 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_YERPY (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 54/97 (55.67%), Postives = 76/97 (78.35%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPEF+GR P++ +L+ L+ED L+++L EPKNAL KQY+ LFS+  V+L F ++AL  IAKKA A+ TGARGLR+I+E  L + MY++P +
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLPSM 390
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_DESHY4.173e-2657.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DESHD4.173e-2657.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUO24.173e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUME4.173e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUMB4.173e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUAB4.173e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUA24.173e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUA14.173e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AGRT54.173e-2656.12ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERPY5.449e-2655.67ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
back to top