CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_YERPP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pestis (strain Pestoides F) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 54/97 (55.67%), Postives = 76/97 (78.35%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPEF+GR P++ +L+ L+ED L+++L EPKNAL KQY+ LFS+  V+L F ++AL  IAKKA A+ TGARGLR+I+E  L + MY++P +
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLPSM 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_YERPN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 54/97 (55.67%), Postives = 76/97 (78.35%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPEF+GR P++ +L+ L+ED L+++L EPKNAL KQY+ LFS+  V+L F ++AL  IAKKA A+ TGARGLR+I+E  L + MY++P +
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLPSM 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_YERPG (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pestis bv. Antiqua (strain Angola) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 54/97 (55.67%), Postives = 76/97 (78.35%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPEF+GR P++ +L+ L+ED L+++L EPKNAL KQY+ LFS+  V+L F ++AL  IAKKA A+ TGARGLR+I+E  L + MY++P +
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLPSM 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_YERPE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pestis GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 54/97 (55.67%), Postives = 76/97 (78.35%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPEF+GR P++ +L+ L+ED L+++L EPKNAL KQY+ LFS+  V+L F ++AL  IAKKA A+ TGARGLR+I+E  L + MY++P +
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLPSM 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_YERPB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 54/97 (55.67%), Postives = 76/97 (78.35%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPEF+GR P++ +L+ L+ED L+++L EPKNAL KQY+ LFS+  V+L F ++AL  IAKKA A+ TGARGLR+I+E  L + MY++P +
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLPSM 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_YERPA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 54/97 (55.67%), Postives = 76/97 (78.35%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPEF+GR P++ +L+ L+ED L+++L EPKNAL KQY+ LFS+  V+L F ++AL  IAKKA A+ TGARGLR+I+E  L + MY++P +
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLPSM 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_YERP3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 54/97 (55.67%), Postives = 76/97 (78.35%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPEF+GR P++ +L+ L+ED L+++L EPKNAL KQY+ LFS+  V+L F ++AL  IAKKA A+ TGARGLR+I+E  L + MY++P +
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLPSM 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_XYLFT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEFVGR P++ +L  L E  LVK+LTEPKNA+ KQ+K+LF M NV+L F + AL  +A+KA  + TGARGLR I+E +L + MYE+P
Sbjct:  296 DLIKFGLIPEFVGRLPVVATLDELDESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALSAVARKALKRKTGARGLRTIVELVLLDTMYELP 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_XYLFM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xylella fastidiosa (strain M12) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEFVGR P++ +L  L E  LVK+LTEPKNA+ KQ+K+LF M NV+L F + AL  +A+KA  + TGARGLR I+E +L + MYE+P
Sbjct:  296 DLIKFGLIPEFVGRLPVVATLDELDESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALSAVARKALKRKTGARGLRTIVELVLLDTMYELP 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_XYLFA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xylella fastidiosa GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEFVGR P++ +L  L E  LVK+LTEPKNA+ KQ+K+LF M NV+L F + AL  +A+KA  + TGARGLR I+E +L + MYE+P
Sbjct:  296 DLIKFGLIPEFVGRLPVVATLDELDESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALSAVARKALKRKTGARGLRTIVELVLLDTMYELP 390
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_YERPP5.449e-2655.67ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERPN5.449e-2655.67ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERPG5.449e-2655.67ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERPE5.449e-2655.67ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERPB5.449e-2655.67ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERPA5.449e-2655.67ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERP35.449e-2655.67ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_XYLFT5.449e-2657.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_XYLFM5.449e-2657.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_XYLFA5.449e-2657.89ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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