CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_XYLF2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xylella fastidiosa (strain M23) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEFVGR P++ +L  L E  LVK+LTEPKNA+ KQ+K+LF M NV+L F + AL  +A+KA  + TGARGLR I+E +L + MYE+P
Sbjct:  296 DLIKFGLIPEFVGRLPVVATLDELDESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALSAVARKALKRKTGARGLRTIVELVLLDTMYELP 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_XANCP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xanthomonas campestris pv. campestris GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 56/95 (58.95%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEFVGR P++ +L  L E  L+K+LTEPKNA+ KQ+K+LF M +V+L F   AL  IAKKA  + TGARGLR I+ES+L + MYE+P
Sbjct:  296 DLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFEMESVELEFRPDALSAIAKKALKRKTGARGLRTIVESVLLDTMYELP 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_XANCB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xanthomonas campestris pv. campestris (strain B100) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 56/95 (58.95%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEFVGR P++ +L  L E  L+K+LTEPKNA+ KQ+K+LF M +V+L F   AL  IAKKA  + TGARGLR I+ES+L + MYE+P
Sbjct:  296 DLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFEMESVELEFRPDALSAIAKKALKRKTGARGLRTIVESVLLDTMYELP 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_XANC8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xanthomonas campestris pv. campestris (strain 8004) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 56/95 (58.95%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEFVGR P++ +L  L E  L+K+LTEPKNA+ KQ+K+LF M +V+L F   AL  IAKKA  + TGARGLR I+ES+L + MYE+P
Sbjct:  296 DLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFEMESVELEFRPDALSAIAKKALKRKTGARGLRTIVESVLLDTMYELP 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHILO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium loti GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 57/95 (60.00%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P+L +L  L E  L+++LTEPKNAL KQY+RLF M NV L F E AL  IAK+A  + TGARGLR+I+E+IL + M+E+P
Sbjct:  293 DLLKFGLIPEFVGRLPVLATLEDLDEPALIQILTEPKNALVKQYQRLFEMENVDLTFHENALSAIAKRAIERKTGARGLRSIMEAILLDTMFELP 387          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_NEIMF (ATP-dependent Clp protease ATP-binding subunit clpX OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 56/98 (57.14%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L ED L+ +LTEPKNAL KQY+ LF M NV+L F E ALR IA++A  + TGARGLR+I+E  L + MY +PD+K
Sbjct:  293 DLIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLK 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_NEIMB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Neisseria meningitidis serogroup B GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 56/98 (57.14%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L ED L+ +LTEPKNAL KQY+ LF M NV+L F E ALR IA++A  + TGARGLR+I+E  L + MY +PD+K
Sbjct:  293 DLIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLK 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_YEREN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia enterocolitica GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 53/99 (53.54%), Postives = 78/99 (78.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 371
            DLI +GLIPEF+GR P++ +L+ L+ED L+++L EPKNAL KQY+ LF++  V+L F ++AL  IAKKA A+ TGARGLR+I+E  L + MY++P +++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLPSMES 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_YERE8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 53/99 (53.54%), Postives = 78/99 (78.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 371
            DLI +GLIPEF+GR P++ +L+ L+ED L+++L EPKNAL KQY+ LF++  V+L F ++AL  IAKKA A+ TGARGLR+I+E  L + MY++P +++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLPSMES 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_XANOR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xanthomonas oryzae pv. oryzae GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEFVGR P++ +L  L E  L+K+LTEPKNA+ KQ+K+LF M  V+L F   AL  IAKKA  + TGARGLR I+ES+L + MYE+P
Sbjct:  296 DLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRADALSAIAKKALKRKTGARGLRTIVESVLLDTMYELP 390          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_XYLF25.449e-2657.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_XANCP5.449e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_XANCB5.449e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_XANC85.449e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHILO5.449e-2660.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NEIMF5.449e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NEIMB5.449e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YEREN7.117e-2653.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERE87.117e-2653.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_XANOR7.117e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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