CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_XANOP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEFVGR P++ +L  L E  L+K+LTEPKNA+ KQ+K+LF M  V+L F   AL  IAKKA  + TGARGLR I+ES+L + MYE+P
Sbjct:  296 DLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRADALSAIAKKALKRKTGARGLRTIVESVLLDTMYELP 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_XANOM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEFVGR P++ +L  L E  L+K+LTEPKNA+ KQ+K+LF M  V+L F   AL  IAKKA  + TGARGLR I+ES+L + MYE+P
Sbjct:  296 DLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRADALSAIAKKALKRKTGARGLRTIVESVLLDTMYELP 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_XANC5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEFVGR P++ +L  L E  L+K+LTEPKNA+ KQ+K+LF M  V+L F   AL  IAKKA  + TGARGLR I+ES+L + MYE+P
Sbjct:  296 DLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRPDALSAIAKKALKRKTGARGLRTIVESVLLDTMYELP 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_XANAC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xanthomonas axonopodis pv. citri GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEFVGR P++ +L  L E  L+K+LTEPKNA+ KQ+K+LF M  V+L F   AL  IAKKA  + TGARGLR I+ES+L + MYE+P
Sbjct:  296 DLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRPDALSAIAKKALKRKTGARGLRTIVESVLLDTMYELP 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_VIBVY (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio vulnificus (strain YJ016) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ YGLIPEF+GR P+  SLT L E+ L+++L +PKNAL KQY  LF +    L F E AL+ IAKKA  + TGARGLR+ILE +L E MYE+P +
Sbjct:  296 DLVKYGLIPEFIGRLPVTASLTELDEEALIQILCQPKNALTKQYAALFELEGADLEFREDALKAIAKKAMERKTGARGLRSILEGVLLETMYELPSM 392
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_VIBVU (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio vulnificus GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ YGLIPEF+GR P+  SLT L E+ L+++L +PKNAL KQY  LF +    L F E AL+ IAKKA  + TGARGLR+ILE +L E MYE+P +
Sbjct:  296 DLVKYGLIPEFIGRLPVTASLTELDEEALIQILCQPKNALTKQYAALFELEGADLEFREDALKAIAKKAMERKTGARGLRSILEGVLLETMYELPSM 392
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_THET8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 55/95 (57.89%), Postives = 73/95 (76.84%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +G+IPEFVGR P++V L  LTED LV++LTEPKNAL KQY+ LF M  ++L FT+ AL+ +A++A  + TGARGLRAILE  + + M+E P
Sbjct:  275 DLIKFGMIPEFVGRAPLIVQLHPLTEDDLVRILTEPKNALVKQYQELFRMEGIELRFTQAALKEVARRALKRGTGARGLRAILEKAMVDLMFEAP 369
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_STRMK (ATP-dependent Clp protease ATP-binding subunit clpX OS=Stenotrophomonas maltophilia (strain K279a) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEFVGR P++ +L  L E  L+K+LTEPKNA+ KQ+K+LF M NV+L F   AL  IA+KA  + TGARGLR I+ES+L + MY++P
Sbjct:  296 DLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFEMENVELEFRPDALSAIARKALKRKTGARGLRTIVESVLLDTMYDLP 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_STRM5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Stenotrophomonas maltophilia (strain R551-3) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEFVGR P++ +L  L E  L+K+LTEPKNA+ KQ+K+LF M NV+L F   AL  IA+KA  + TGARGLR I+ES+L + MY++P
Sbjct:  296 DLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFEMENVELEFRPDALSAIARKALKRKTGARGLRTIVESVLLDTMYDLP 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHEFN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella frigidimarina (strain NCIMB 400) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 55/98 (56.12%), Postives = 76/98 (77.55%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P++ +LT L E  LV++L+EPKNAL KQY  LF M +V+L F + AL+ IA+KA ++ TGARGLR+I+ESIL + MY+IP  +
Sbjct:  295 DLVKFGLIPEFIGRLPVVATLTELDEAALVQILSEPKNALTKQYSALFEMEDVELEFRDDALQAIAQKAMSRKTGARGLRSIVESILLDTMYDIPSTQ 392
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_XANOP7.117e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_XANOM7.117e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_XANC57.117e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_XANAC7.117e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBVY7.117e-2656.70ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBVU7.117e-2656.70ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_THET87.117e-2657.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STRMK7.117e-2657.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STRM57.117e-2657.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEFN7.117e-2656.12ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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