CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHOS5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P++ +LT L E  LV +LTEPKNAL KQY+RLF +  VKL FT  AL  IAK+A  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  290 DLLKFGLIPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADALTAIAKRAIKRKTGARGLRSIMEDILLDTMFELPGLE 387
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHOS1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P++ +LT L E  LV +LTEPKNAL KQY+RLF +  VKL FT  AL  IAK+A  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  290 DLLKFGLIPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADALTAIAKRAIKRKTGARGLRSIMEDILLDTMFELPGLE 387
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PSEPK (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas putida (strain KT2440) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P+L +L  L E  L+++LTEPKNAL KQY +LF M +V L F   AL+ +A+KA  + TGARGLR+ILE +L + MYEIP  K
Sbjct:  310 DLVKFGLIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVARKALERKTGARGLRSILEGVLLDTMYEIPSKK 407
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PSEPG (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas putida (strain GB-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P+L +L  L E  L+++LTEPKNAL KQY +LF M +V L F   AL+ +A+KA  + TGARGLR+ILE +L + MYEIP  K
Sbjct:  295 DLVKFGLIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVARKALERKTGARGLRSILEGVLLDTMYEIPSKK 392
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PSEP1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P+L +L  L E  L+++LTEPKNAL KQY +LF M +V L F   AL+ +A+KA  + TGARGLR+ILE +L + MYEIP  K
Sbjct:  295 DLVKFGLIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVARKALERKTGARGLRSILEGVLLDTMYEIPSKK 392
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_OCHA4 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 56/98 (57.14%), Postives = 75/98 (76.53%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P++ +L  L  D LV++LTEPKNAL KQY+RLF M +V+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  293 DLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMESVELSFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_NOCFA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Nocardia farcinica GN=clpX PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+T L ++ LVK+L+EPKNAL KQY RLF M+ V+L FT+ AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTQDALEAIADQAILRGTGARGLRAIMEEVLLPVMYDIP 388
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MYCPA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mycobacterium paratuberculosis GN=clpX PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 56/95 (58.95%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+T L  + LVK+L+EPKNAL KQY RLF M+ V+L FT+ AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVVASVTNLDRESLVKILSEPKNALVKQYTRLFEMDGVELEFTDDALEAIADQAIHRGTGARGLRAIMEEVLLPVMYDIP 388
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MYCA1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mycobacterium avium (strain 104) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 56/95 (58.95%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+T L  + LVK+L+EPKNAL KQY RLF M+ V+L FT+ AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVVASVTNLDRESLVKILSEPKNALVKQYTRLFEMDGVELEFTDDALEAIADQAIHRGTGARGLRAIMEEVLLPVMYDIP 388
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ENTFA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Enterococcus faecalis GN=clpX PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  LT D LV++LTEPKNAL KQY++L S+++ KL F  +AL+ IA KA  +NTGARGLR+I+E I+ + M+++P
Sbjct:  290 DLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLEFEPEALKAIAAKAIERNTGARGLRSIIEEIMMDVMFDVP 384
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_RHOS59.295e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOS19.295e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSEPK9.295e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSEPG9.295e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSEP19.295e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_OCHA49.295e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NOCFA9.295e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MYCPA9.295e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MYCA19.295e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ENTFA9.295e-2654.74ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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