CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOD6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium difficile (strain 630) GN=clpX PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27
Identity = 56/95 (58.95%), Postives = 76/95 (80.00%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ YG+IPEF+GR P+L +L  L ED L+++L EPKNAL KQYK+L  +++V+L F E ALR IAKKA  +NTGARGLR+I+ES++ E M+E+P
Sbjct:  289 DLLKYGIIPEFIGRIPVLATLELLDEDALMQILQEPKNALVKQYKKLLELDDVELEFEEGALRAIAKKAIERNTGARGLRSIVESVMMETMFEVP 383
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ACIF5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=clpX PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27
Identity = 59/97 (60.82%), Postives = 74/97 (76.29%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ YGLIPEFVGR PIL  L  L E+ L+ +LT+PKNAL KQY++LF++  V L F  +ALR IAKKA A+ TGARGLR+ILE IL + MYE+P +
Sbjct:  292 DLVRYGLIPEFVGRLPILALLEELDEEALISILTDPKNALVKQYQKLFALEGVTLEFRTEALRAIAKKALARKTGARGLRSILEQILLDTMYELPSM 388
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ACIF2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=clpX PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27
Identity = 59/97 (60.82%), Postives = 74/97 (76.29%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ YGLIPEFVGR PIL  L  L E+ L+ +LT+PKNAL KQY++LF++  V L F  +ALR IAKKA A+ TGARGLR+ILE IL + MYE+P +
Sbjct:  292 DLVRYGLIPEFVGRLPILALLEELDEEALISILTDPKNALVKQYQKLFALEGVTLEFRTEALRAIAKKALARKTGARGLRSILEQILLDTMYELPSM 388
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_DESAH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=clpX PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 58/98 (59.18%), Postives = 75/98 (76.53%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEF+GR P++ SL+ L E  LVK+LTEPKNAL KQY+RLF   NVKL FTE+AL  +AK+A  + +GARGLRAI+E  + + MYE+P  +
Sbjct:  292 DLIKFGLIPEFLGRLPVVTSLSELNEASLVKILTEPKNALLKQYQRLFEFENVKLTFTEEALAAMAKEAVTRRSGARGLRAIMEETMLDIMYELPSTE 389
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CALS8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=clpX PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 56/95 (58.95%), Postives = 78/95 (82.11%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +G+IPEF+GR PI+V+L AL ++ L+K+LTEPKNAL KQY++LF+M+ V+L F ++AL  IA KA  +NTGARGLRAI+E I+ + M+EIP
Sbjct:  290 DLLKFGMIPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKEALEAIADKAIERNTGARGLRAIMEEIMLDVMFEIP 384
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_VIBHB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 57/95 (60.00%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ YGLIPEF+GR P+  +LT L E+ L+++L EPKNAL KQY  LF + + +L F E ALR IAKKA  + TGARGLR+ILES+L E MYE+P
Sbjct:  296 DLVKYGLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDAELEFREDALRAIAKKAMERKTGARGLRSILESVLLETMYELP 390
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHESW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella sp. (strain W3-18-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 57/97 (58.76%), Postives = 75/97 (77.32%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ YGLIPEF+GR P++ +LT L E+ LV++L++PKNAL KQY  LF M  V+L F E AL+ IA KA ++ TGARGLR+I+ESIL + MY+IP V
Sbjct:  295 DLVKYGLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIPSV 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHEPC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 57/97 (58.76%), Postives = 75/97 (77.32%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ YGLIPEF+GR P++ +LT L E+ LV++L++PKNAL KQY  LF M  V+L F E AL+ IA KA ++ TGARGLR+I+ESIL + MY+IP V
Sbjct:  295 DLVKYGLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIPSV 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHEB9 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella baltica (strain OS195) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 57/97 (58.76%), Postives = 75/97 (77.32%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ YGLIPEF+GR P++ +LT L E+ LV++L++PKNAL KQY  LF M  V+L F E AL+ IA KA ++ TGARGLR+I+ESIL + MY+IP V
Sbjct:  295 DLVKYGLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIPSV 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHEB8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella baltica (strain OS185) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 57/97 (58.76%), Postives = 75/97 (77.32%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ YGLIPEF+GR P++ +LT L E+ LV++L++PKNAL KQY  LF M  V+L F E AL+ IA KA ++ TGARGLR+I+ESIL + MY+IP V
Sbjct:  295 DLVKYGLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIPSV 391
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_CLOD63.774e-2758.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIF53.774e-2760.82ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIF23.774e-2760.82ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DESAH4.929e-2759.18ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CALS84.929e-2758.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBHB6.437e-2760.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHESW6.437e-2758.76ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEPC6.437e-2758.76ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEB96.437e-2758.76ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEB86.437e-2758.76ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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