CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHOOB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodococcus opacus (strain B4) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+T L ++ LV++L+EPKNAL KQY RLF M+ V+L FT  AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVVASVTNLDKESLVQILSEPKNALVKQYNRLFDMDGVELEFTTDALEAIADQAILRGTGARGLRAIMEEVLLPVMYDIP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PECCP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 52/99 (52.53%), Postives = 78/99 (78.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 371
            DLI +GLIPEF+GR P++ +L  L+E+ L+++L EPKNAL KQY+ LF++  V+L F ++AL  IAKKA A+ TGARGLR+I+E+ L + MY++P +++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLRELSEEALIQILREPKNALTKQYQALFNLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSLES 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_NITOC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI YGLIPEFVGR P++ +L  L E  L+++L EPKNAL KQ+ RLF M N K+ F E ALR +A KA    TGARGLR+ILE++L + MY++P +
Sbjct:  295 DLIKYGLIPEFVGRMPVVATLDELDEAALIRILREPKNALTKQFARLFEMENCKVEFREDALRAVATKAMELKTGARGLRSILENVLLDTMYDLPSM 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MYCA9 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR PI+ S+T L  + L+K+L+EPKNAL KQY RLF M+ V+L F++ AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPIVASVTNLDRESLIKILSEPKNALVKQYTRLFEMDGVELEFSQDALEAIADQAIHRGTGARGLRAIMEEVLQPVMYDIP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MARMM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Maricaulis maris (strain MCS10) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 56/98 (57.14%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P++ +L  L    LV++LTEPKNAL KQY+RLF M  V L FTE AL+ IA +A A+ TGARGLR+I+E IL E M+++P ++
Sbjct:  293 DLLRFGLIPEFVGRLPVIATLEDLDIGALVQILTEPKNALVKQYQRLFEMEGVGLTFTEDALKAIANRAIARKTGARGLRSIMEGILLETMFDLPSLE 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_GEOSF (ATP-dependent Clp protease ATP-binding subunit clpX OS=Geobacter sp. (strain FRC-32) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 55/95 (57.89%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +G IPEFVGR P+L SLT L E+ +V++L EPKNAL KQY++LF M +VKL FT+ +L  IA++A  + TGARGLR+ILE+ + + MYEIP
Sbjct:  291 DLLKFGFIPEFVGRLPVLASLTELDEEAMVQILKEPKNALVKQYQKLFDMEHVKLKFTDGSLVAIAREALKRKTGARGLRSILENAMLDIMYEIP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_FRASC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Frankia sp. (strain CcI3) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 53/98 (54.08%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YG+IPEF+GR P++ S++ L  + L+++LTEPKNAL +QYKRLF +++V L FT  AL  IA +A  + TGARGLRAI+E +L   MY+IP  K
Sbjct:  294 DLLKYGMIPEFIGRLPVITSVSNLDREALIRILTEPKNALVRQYKRLFELDSVDLDFTSDALEAIADQAILRGTGARGLRAIMEEVLLSVMYDIPSRK 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_FRAAA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Frankia alni (strain ACN14a) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 53/98 (54.08%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YG+IPEF+GR P++ S++ L  + L+++LTEPKNAL +QYKRLF +++V L FT  AL  IA +A  + TGARGLRAI+E +L   MY+IP  K
Sbjct:  298 DLLKYGMIPEFIGRLPVITSVSNLDREALIRILTEPKNALVRQYKRLFELDSVDLDFTSDALEAIADQAILRGTGARGLRAIMEEVLLSVMYDIPSRK 395          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_DESDG (ATP-dependent Clp protease ATP-binding subunit clpX OS=Desulfovibrio desulfuricans (strain G20) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 50/97 (51.55%), Postives = 74/97 (76.29%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ +GLIPEF+GR P++  +  L ED LV++L EPKNAL +QY++LF +++VKL FT  ALR +A++A  + TGARGLR +LES++ E M+ +P +
Sbjct:  290 DLVKFGLIPEFIGRIPVITHVNELAEDDLVRILQEPKNALVRQYQKLFELDHVKLRFTSNALRAVARQAIERKTGARGLRNVLESVMLEIMFNLPSM 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CORA7 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 53/96 (55.21%), Postives = 73/96 (76.04%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 362
            DL+ +GLIPEF+GR P++ ++  L  + LVKVL EPKN+L KQY+RLFSM+  +LHF ++AL  IA+ A  + TGARGLRAI+E +L   MY++PD
Sbjct:  304 DLVKFGLIPEFIGRLPVVATVDNLDRESLVKVLVEPKNSLVKQYQRLFSMDGAELHFEDEALEAIAELALERKTGARGLRAIMEELLVPIMYDLPD 399          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_RHOOB2.705e-2557.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PECCP2.705e-2552.53ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NITOC2.705e-2556.70ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MYCA92.705e-2557.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MARMM2.705e-2557.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_GEOSF2.705e-2557.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_FRASC2.705e-2554.08ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_FRAAA2.705e-2554.08ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DESDG2.705e-2551.55ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CORA72.705e-2555.21ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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