CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_HALHL (ATP-dependent Clp protease ATP-binding subunit clpX OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGR P++ +L  L ++ LV++L EPKNAL KQY++LF M  V+L   + ALR +A KA  + TGARGLR I+E +L E MYE+P ++
Sbjct:  295 DLVRYGLIPEFVGRLPVIATLNELDQEALVQILREPKNALVKQYQKLFEMEGVELDLRDDALRAVADKAMERKTGARGLRTIIEQVLLETMYELPSME 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_FRASN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Frankia sp. (strain EAN1pec) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YG+IPEF+GR PI+ S++ L  + L+++LTEPKNAL +QYKRLF ++ V L FT  AL  IA +A  + TGARGLRAI+E +L   MY+IP  K
Sbjct:  295 DLLKYGMIPEFIGRLPIITSVSNLDREALIRILTEPKNALVRQYKRLFELDGVDLDFTTDALEAIADQAILRGTGARGLRAIMEEVLLSVMYDIPSRK 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_DINSH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Dinoroseobacter shibae (strain DFL 12) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++ +LT L ED LV +LT+PKNAL KQY+RLF + + +L FTE AL  IA +A  + TGARGLR+ILE IL   M+++P
Sbjct:  289 DLLKFGLIPEFVGRLPVIATLTDLDEDALVTILTQPKNALVKQYQRLFELEDAQLTFTEDALNAIAGRAIERKTGARGLRSILEDILLNTMFDLP 383          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BREBN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=clpX PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 55/95 (57.89%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P+L +L  L E+ LV++LTEPKN+L KQY++L S++ V+L F   AL  IAK+A  +NTGARGLRAI+E I+ + MYE+P
Sbjct:  291 DLLKFGLIPEFVGRLPVLATLEPLDEETLVRILTEPKNSLVKQYQKLLSLDGVELEFDNGALLQIAKEAIKRNTGARGLRAIIEQIMLDMMYELP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_AZOBR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Azospirillum brasilense GN=clpX PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 53/95 (55.79%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L+ L E  LV++LT+PKNAL KQY+RLF M +V+L F++ ALR I+ KA  + TGARGLR+I+ESIL + M+++P
Sbjct:  291 DLLKFGLIPEFIGRLPVVATLSDLDETALVEILTKPKNALVKQYQRLFEMEDVRLEFSDDALRTISHKAIQRKTGARGLRSIMESILLDPMFDLP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX2_METCA (ATP-dependent Clp protease ATP-binding subunit clpX 2 OS=Methylococcus capsulatus GN=clpX2 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI YGLIPEFVGR P++ +L  L E  LV++LTEPKNAL KQY+RLF M + +L   + AL  IA+KA A+ TGARGLR ILE  L + MYE+P
Sbjct:  297 DLIRYGLIPEFVGRLPVVATLEELDEAALVRILTEPKNALVKQYRRLFEMESCELEIRDDALGAIARKAMARKTGARGLRTILEHTLLDTMYELP 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_THET2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpX PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 54/95 (56.84%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +G+IPEFVGR P++V L  L ED LV++LTEPKNAL KQY+ LF M  ++L FT+ AL+ +A++A  + TGARGLRAILE  + + M+E P
Sbjct:  275 DLIKFGMIPEFVGRAPLIVQLHPLGEDDLVRILTEPKNALVKQYQELFRMEGIELRFTQAALKEVARRALKRGTGARGLRAILEKAMVDLMFEAP 369          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PSEPF (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas fluorescens (strain Pf0-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 55/95 (57.89%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P+L +L  L E  L+++LTEPKNAL KQY +LF M  V L F   AL+ +AK+A  + TGARGLR+ILE +L + MYEIP
Sbjct:  295 DLVKFGLIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAKRALERKTGARGLRSILEGVLLDTMYEIP 389          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PSEAE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas aeruginosa GN=clpX PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 55/95 (57.89%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++ +L  L E  L+++LTEPKNAL KQY +LF M  V L F   AL+ +A+KA  + TGARGLR+ILE IL + MYEIP
Sbjct:  294 DLVKFGLIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVARKALERKTGARGLRSILEGILLDTMYEIP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PSEAB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=clpX PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 55/95 (57.89%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++ +L  L E  L+++LTEPKNAL KQY +LF M  V L F   AL+ +A+KA  + TGARGLR+ILE IL + MYEIP
Sbjct:  294 DLVKFGLIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVARKALERKTGARGLRSILEGILLDTMYEIP 388          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_HALHL3.532e-2554.08ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_FRASN3.532e-2555.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DINSH3.532e-2557.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BREBN3.532e-2557.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AZOBR3.532e-2555.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX2_METCA3.532e-2560.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_THET24.613e-2556.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSEPF4.613e-2557.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSEAE4.613e-2557.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSEAB4.613e-2557.89ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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