CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ECO55 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Escherichia coli (strain 55989 / EAEC) GN=clpX PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 52/98 (53.06%), Postives = 76/98 (77.55%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEF+GR P++ +L  L+E+ L+++L EPKNAL KQY+ LF++  V L F ++AL  IAKKA A+ TGARGLR+I+E+ L + MY++P ++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSME 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ECO45 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=clpX PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 52/98 (53.06%), Postives = 76/98 (77.55%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEF+GR P++ +L  L+E+ L+++L EPKNAL KQY+ LF++  V L F ++AL  IAKKA A+ TGARGLR+I+E+ L + MY++P ++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSME 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ECO27 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=clpX PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 52/98 (53.06%), Postives = 76/98 (77.55%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEF+GR P++ +L  L+E+ L+++L EPKNAL KQY+ LF++  V L F ++AL  IAKKA A+ TGARGLR+I+E+ L + MY++P ++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSME 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ECO24 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=clpX PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 52/98 (53.06%), Postives = 76/98 (77.55%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEF+GR P++ +L  L+E+ L+++L EPKNAL KQY+ LF++  V L F ++AL  IAKKA A+ TGARGLR+I+E+ L + MY++P ++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSME 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CITK8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=clpX PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 52/98 (53.06%), Postives = 76/98 (77.55%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEF+GR P++ +L  L+E+ L+++L EPKNAL KQY+ LF++  V L F ++AL  IAKKA A+ TGARGLR+I+E+ L + MY++P ++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSME 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_THIDA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Thiobacillus denitrificans (strain ATCC 25259) GN=clpX PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 55/98 (56.12%), Postives = 71/98 (72.45%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI YGLIPEFVGR P++ +L  L E  LV++LTEPKNAL KQ+ +LF M  V L F + AL  IAK+A  + TGARGLR+I+E  L + MY++P +K
Sbjct:  292 DLIKYGLIPEFVGRLPVVATLDELDEAALVQILTEPKNALTKQFAKLFKMEGVDLEFRDDALNAIAKRALLRRTGARGLRSIIEHALLDTMYDLPSLK 389
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PSEU2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas syringae pv. syringae (strain B728a) GN=clpX PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 54/95 (56.84%), Postives = 70/95 (73.68%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P+L +L  L E  L+++LTEPKNAL KQY +LF M  V L F   AL+ +A++A  + TGARGLR+ILE +L + MYEIP
Sbjct:  295 DLVKFGLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVARRALERKTGARGLRSILEGVLLDTMYEIP 389
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PSESM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas syringae pv. tomato GN=clpX PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 54/95 (56.84%), Postives = 70/95 (73.68%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P+L +L  L E  L+++LTEPKNAL KQY +LF M  V L F   AL+ +A++A  + TGARGLR+ILE +L + MYEIP
Sbjct:  295 DLVKFGLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVARRALERKTGARGLRSILEGVLLDTMYEIP 389
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PSEMY (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas mendocina (strain ymp) GN=clpX PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 55/95 (57.89%), Postives = 70/95 (73.68%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++ +L  L E  LV++LTEPKNAL KQY +LF M  V L F   AL+ +A++A  + TGARGLR+ILE IL + MYEIP
Sbjct:  294 DLVKFGLIPEFVGRLPVIATLEELDEAALVQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAQRALERKTGARGLRSILEGILLDTMYEIP 388
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PSE14 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=clpX PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 54/95 (56.84%), Postives = 70/95 (73.68%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P+L +L  L E  L+++LTEPKNAL KQY +LF M  V L F   AL+ +A++A  + TGARGLR+ILE +L + MYEIP
Sbjct:  295 DLVKFGLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVARRALERKTGARGLRSILEGVLLDTMYEIP 389
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_ECO556.025e-2553.06ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ECO456.025e-2553.06ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ECO276.025e-2553.06ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ECO246.025e-2553.06ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CITK86.025e-2553.06ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_THIDA7.869e-2556.12ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSEU27.869e-2556.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSESM7.869e-2556.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSEMY7.869e-2557.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSE147.869e-2556.84ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
back to top