CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHEB5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 57/97 (58.76%), Postives = 75/97 (77.32%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ YGLIPEF+GR P++ +LT L E+ LV++L++PKNAL KQY  LF M  V+L F E AL+ IA KA ++ TGARGLR+I+ESIL + MY+IP V
Sbjct:  295 DLVKYGLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIPSV 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHEB2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella baltica (strain OS223) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 57/97 (58.76%), Postives = 75/97 (77.32%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ YGLIPEF+GR P++ +LT L E+ LV++L++PKNAL KQY  LF M  V+L F E AL+ IA KA ++ TGARGLR+I+ESIL + MY+IP V
Sbjct:  295 DLVKYGLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIPSV 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LACPL (ATP-dependent Clp protease ATP-binding subunit clpX OS=Lactobacillus plantarum GN=clpX PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 59/101 (58.42%), Postives = 79/101 (78.22%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP---DVK 368
            DL+ +GLIPEF+GR PIL +L  LTED LV++LTEPKNAL KQY+RL +++  +L F + ALR IA++A A+NTGARGLR+I+E  + + MY+IP   DVK
Sbjct:  296 DLLQFGLIPEFIGRLPILTALERLTEDDLVRILTEPKNALVKQYQRLIALDGAELDFNDDALRAIAQEALARNTGARGLRSIIEDTMRDIMYDIPSREDVK 396          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BRASB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 57/98 (58.16%), Postives = 77/98 (78.57%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGR P++ +L  L E+ L K+LTEPKNAL KQY+RLF M N++L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  291 DLLKYGLIPEFVGRLPVVATLEDLDENSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_AGRVS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 56/98 (57.14%), Postives = 78/98 (79.59%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P+L +L  L ED L+++L+EPKNAL KQY+RLF M +V+L F E ALR IA+KA  + TGARGLR+I+E IL + M+E+P+++
Sbjct:  294 DLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELSFHEDALREIARKAITRKTGARGLRSIMEKILLDTMFELPELE 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ACIAD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter sp. (strain ADP1) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P++ +L  L E  L+++LTEPKNAL +QY+ LF M NV L F E ALR IAKKA  +NTGARGLR+I+E++L E MY++P  K
Sbjct:  293 DLVKFGLIPEFIGRLPVIATLEELDEAALMQILTEPKNALTRQYQSLFQMENVDLVFEESALRAIAKKALERNTGARGLRSIMENVLLETMYDLPSRK 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHESR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella sp. (strain MR-7) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 56/98 (57.14%), Postives = 75/98 (76.53%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEF+GR P++ +LT L E+ LV++L+EPKNAL KQY  LF M  V+L F E AL+ IA KA ++ TGARGLR+I+E IL + MY+IP ++
Sbjct:  295 DLVKYGLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVEGILLDTMYDIPSIE 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHESM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella sp. (strain MR-4) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 56/98 (57.14%), Postives = 75/98 (76.53%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEF+GR P++ +LT L E+ LV++L+EPKNAL KQY  LF M  V+L F E AL+ IA KA ++ TGARGLR+I+E IL + MY+IP ++
Sbjct:  295 DLVKYGLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVEGILLDTMYDIPSIE 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHESA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella sp. (strain ANA-3) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 56/98 (57.14%), Postives = 75/98 (76.53%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEF+GR P++ +LT L E+ LV++L+EPKNAL KQY  LF M  V+L F E AL+ IA KA ++ TGARGLR+I+E IL + MY+IP ++
Sbjct:  295 DLVKYGLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVEGILLDTMYDIPSIE 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MOOTA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Moorella thermoacetica (strain ATCC 39073) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ YGLIPEFVGR P++V+L AL E  L++VLTEP+NAL KQY++LF M+ V L F E AL  IA++A  + TGARGLRAILE I+ + MYEIP
Sbjct:  289 DLLKYGLIPEFVGRLPVIVTLDALDETALIRVLTEPRNALVKQYQKLFEMDGVTLEFKEDALVTIAREAIKRETGARGLRAILEEIMLDVMYEIP 383          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_SHEB56.437e-2758.76ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEB26.437e-2758.76ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LACPL6.437e-2758.42ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRASB6.437e-2758.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AGRVS6.437e-2757.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIAD6.437e-2758.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHESR8.407e-2757.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHESM8.407e-2757.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHESA8.407e-2757.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MOOTA8.407e-2762.11ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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