CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MYCVP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 54/95 (56.84%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+T L ++ LV++L++PKNAL KQY RLF M+ V+L F E AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVVASVTNLDKESLVQILSQPKNALVKQYTRLFEMDGVELEFAEDALEAIADQAIHRGTGARGLRAIMEEVLLPVMYDIP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_FRATT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Francisella tularensis subsp. tularensis GN=clpX PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 56/95 (58.95%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL  +GLIPE +GR PI+  L  L E+ LV++LTEPKNAL KQY +LF  +NV + FT++AL  IAKKA  K TGARGLR ILE++L E M+ IP
Sbjct:  286 DLTRFGLIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIAKKAITKKTGARGLRTILENVLLEVMFHIP 380          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CORGL (ATP-dependent Clp protease ATP-binding subunit clpX OS=Corynebacterium glutamicum GN=clpX PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 54/98 (55.10%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P++ +++ L +  LVKVLTEP+N+L KQY+RLF M++  L FT+ AL  IA +A  + TGARGLRAI+E IL   MY++PD K
Sbjct:  299 DLVKFGLIPEFIGRLPVVATVSNLDQKSLVKVLTEPRNSLVKQYRRLFEMDDAVLTFTDDALEEIANQALERKTGARGLRAIMEEILVPIMYDLPDRK 396          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_COLP3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=clpX PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEF+GR P+L +L  L E  L+++L EPKNAL KQ+  LF M NV+L F   AL  IA+KA  + TGARGLR+I+E++L + MYE+P ++
Sbjct:  295 DLVKYGLIPEFIGRLPVLATLRELDEAALIQILQEPKNALTKQFTALFDMENVELEFRSDALHAIARKAMDRKTGARGLRSIVEAVLLDTMYELPSME 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BACSU (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bacillus subtilis GN=clpX PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 52/95 (54.74%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ SL  L E+ LV +LT+PKNAL KQ+K++  ++NV+L F E+AL  IAKKA  + TGARGLR+I+E I+ + M+E+P
Sbjct:  288 DLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFELP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BACSK (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bacillus clausii (strain KSM-K16) GN=clpX PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 53/95 (55.79%), Postives = 75/95 (78.95%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR PI+ SL+ L  D LV++LT+PKNAL KQY++L  +++V+L FTE ALR IA KA  + TGARGLR+I+E I+ + M+++P
Sbjct:  289 DLLRFGLIPEFIGRLPIISSLSPLDTDALVEILTKPKNALVKQYQKLLELDDVELEFTEDALREIANKAIERKTGARGLRSIIEGIMLDVMFDLP 383          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_NEIG1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=clpX PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L ED L+ +LTEPKNAL KQY+ LF + NV L F E ALR IA++A  + TGARGLR+I+E  L + MY +PD++
Sbjct:  293 DLIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLQ 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LYSSC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Lysinibacillus sphaericus (strain C3-41) GN=clpX PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 56/101 (55.45%), Postives = 75/101 (74.26%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP---DVK 368
            DL+ +GLIPEF+GR P+L SL  L E  LV++LTEPKNAL KQY+++  ++ V+L F E AL  IAK+A  + TGARGLR+I+ES + + MYE+P   DVK
Sbjct:  288 DLLKFGLIPEFIGRLPVLASLEQLNEAALVQILTEPKNALAKQYQKMLELDGVELEFDEGALAEIAKEAIERKTGARGLRSIIESTMLDVMYELPSREDVK 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ENT38 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Enterobacter sp. (strain 638) GN=clpX PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 52/98 (53.06%), Postives = 75/98 (76.53%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEF+GR P++ +L  L+ED L+++L EPKNAL KQY+ LF++  V L F ++AL  IAKKA  + TGARGLR+I+E+ L + MY++P ++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALIAIAKKAMIRKTGARGLRSIVEAALLDTMYDLPSME 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_DESPS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Desulfotalea psychrophila GN=clpX PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 52/97 (53.61%), Postives = 73/97 (75.26%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ +GLIPE VGR P++ SL  L+ED LV++L EPKNAL +Q+++LF    VKL FTE +L  +AKKA A+ +GARGLR++LE  + + MY+IP +
Sbjct:  292 DLLKFGLIPELVGRLPVIASLRELSEDDLVRILREPKNALTRQFEKLFQFEGVKLTFTEGSLAAVAKKAIARKSGARGLRSVLEEAMLDIMYDIPSL 388          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_MYCVP7.869e-2556.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_FRATT7.869e-2558.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CORGL7.869e-2555.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_COLP37.869e-2554.08ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BACSU7.869e-2554.74ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BACSK7.869e-2555.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NEIG11.028e-2455.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LYSSC1.028e-2455.45ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ENT381.028e-2453.06ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DESPS1.028e-2453.61ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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