CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ORITI (ATP-dependent Clp protease ATP-binding subunit clpX OS=Orientia tsutsugamushi (strain Ikeda) GN=clpX PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 53/98 (54.08%), Postives = 75/98 (76.53%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL  +GLIPEF+GR P++ +L+ L +  LV +LT+PKNAL KQY++LF ++  +L F E+AL  IA+KA AK TGARGLRAILE +L + M+E+ ++K
Sbjct:  286 DLTKFGLIPEFLGRLPVIATLSDLNQQSLVDILTKPKNALVKQYQKLFELDGAELIFEEEALVAIAQKALAKKTGARGLRAILECVLLDTMFELSNLK 383          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ORITB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Orientia tsutsugamushi (strain Boryong) GN=clpX PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 53/98 (54.08%), Postives = 75/98 (76.53%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL  +GLIPEF+GR P++ +L+ L +  LV +LT+PKNAL KQY++LF ++  +L F E+AL  IA+KA AK TGARGLRAILE +L + M+E+ ++K
Sbjct:  286 DLTKFGLIPEFLGRLPVIATLSDLNQQSLVDILTKPKNALVKQYQKLFELDGAELIFEEEALIAIAQKALAKKTGARGLRAILECVLLDTMFELSNLK 383          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MICLC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=clpX PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 50/95 (52.63%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ ++  LT +QLV+VLTEPKNAL KQY+++F M+ V+L F + AL  +  +A A+ TGARGLR+I+E++L   M+E+P
Sbjct:  301 DLLKFGLIPEFIGRLPVITTVEDLTHEQLVRVLTEPKNALLKQYQKMFLMDGVELEFEQDALDAVVAQAEARGTGARGLRSIMENVLKPVMFELP 395          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ERYLH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Erythrobacter litoralis (strain HTCC2594) GN=clpX PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 51/97 (52.58%), Postives = 75/97 (77.32%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ +GLIPEFVGR P++ +L  L  D LV +L EPKNA+ KQY +LF + +V+L FT++AL+ IA++A  + TGARGLR+I+E IL + M+++PD+
Sbjct:  292 DLLKFGLIPEFVGRLPVIATLHDLDVDALVTILQEPKNAIVKQYSKLFELEDVELTFTDEALQAIAERAILRKTGARGLRSIVEGILLDTMFDLPDL 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BLOFL (ATP-dependent Clp protease ATP-binding subunit clpX OS=Blochmannia floridanus GN=clpX PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 58/97 (59.79%), Postives = 73/97 (75.26%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATA-KNTGARGLRAILESILTEAMYEIPD 362
            DLI +GLIPEFVGRFP++  L  L E +LV +L EPKNAL KQY++LF  + VKL F E AL  IAK A A K++GARGLR ILE+IL + MY++P+
Sbjct:  304 DLIKFGLIPEFVGRFPVISILNELKESELVAILKEPKNALIKQYQKLFYTDKVKLEFAESALSAIAKCAMATKSSGARGLRTILENILLDMMYDLPN 400          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_AZOSB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Azoarcus sp. (strain BH72) GN=clpX PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 52/97 (53.61%), Postives = 71/97 (73.20%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ +GLIPEFVGR P++ +L  L ED L+++L EPKNAL KQY++LFSM  V L     AL  +A+KA  + TGARGLR+ILE+ L + MY++P +
Sbjct:  293 DLVKFGLIPEFVGRLPVVATLQELDEDALIQILIEPKNALVKQYQKLFSMEGVDLEIRPAALHAVARKAIKRKTGARGLRSILEAALLDIMYDLPQL 389          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHESH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella sediminis (strain HAW-EB3) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEF+GR P+L +L  L +  L+++L+EPKNA+ KQ+  LF M  V+L F E AL+ IA KA  + TGARGLR+I+E IL + MY++P  +
Sbjct:  295 DLVKYGLIPEFIGRLPVLATLAELDDAALIQILSEPKNAITKQFAALFDMEGVELEFREDALKAIALKAQTRKTGARGLRSIVEGILLDIMYDLPSTE 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_POLSJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 53/96 (55.21%), Postives = 71/96 (73.96%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 362
            DLI +GLIPE VGR P++ +L  LTED LV++LTEPKNA+ KQ+ +L SM  V L     AL+ IA+KA A+ TGARGLR+ILE  L + M+++P+
Sbjct:  295 DLIKFGLIPELVGRMPVVATLAELTEDALVQILTEPKNAVVKQFSKLLSMEGVDLEIRPSALKAIARKALARKTGARGLRSILEQSLIDTMFDLPN 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LACRD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Lactobacillus reuteri (strain DSM 20016) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 50/98 (51.02%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P++ +L  L ED LV++LTEPKNAL KQY+ L  ++  +L FT+ ALR +A+ A  +NTGARGLR+I+E ++ + M+++P  K
Sbjct:  291 DLLKFGLIPEFIGRLPVMTALEKLDEDDLVRILTEPKNALVKQYQELIRLDGSQLTFTDGALRAMAQLAIKRNTGARGLRSIIEDVMRDVMFDLPSRK 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LACGA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 52/95 (54.74%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR PI+ +L  L+   L+++LTEPKNAL KQYK+L S++NV L FTE AL+ IA  A +++ GARGLR+I+E+ L + MY  P
Sbjct:  289 DLVKFGLIPEFIGRIPIITTLDKLSTKDLIRILTEPKNALVKQYKKLLSLDNVDLEFTEGALKAIADMAISRHMGARGLRSIVENSLMDVMYRTP 383          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_ORITI5.101e-2454.08ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ORITB5.101e-2454.08ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MICLC5.101e-2452.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ERYLH5.101e-2452.58ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BLOFL5.101e-2459.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AZOSB5.101e-2453.61ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHESH6.662e-2452.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_POLSJ6.662e-2455.21ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LACRD6.662e-2451.02ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LACGA6.662e-2454.74ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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