CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MARAV (ATP-dependent Clp protease ATP-binding subunit clpX OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 56/95 (58.95%), Postives = 75/95 (78.95%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++ +LT L E+ LV++LTEPKNAL KQY++LF M  V+L F E ALR +A+KA  + TGARGLR+I+E+ L + MY+IP
Sbjct:  296 DLVKFGLIPEFVGRLPVVATLTELDEEALVQILTEPKNALTKQYQKLFDMEGVELDFREDALRAVARKAMERKTGARGLRSIMEATLLDTMYQIP 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_IDILO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Idiomarina loihiensis GN=clpX PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 56/98 (57.14%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEF+GR P++ +L  L E+ L+++L EPKNAL KQY  LF M +V+L F E ALR IAKKA A+ TGARGLR+I+E +L   MYE+P ++
Sbjct:  292 DLVRYGLIPEFIGRLPVVATLDELDEEALIEILREPKNALTKQYSALFEMEDVELEFREDALRAIAKKAMARKTGARGLRSIVEGVLLGTMYELPSIE 389          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BUCAT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 58/97 (59.79%), Postives = 74/97 (76.29%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPEF+GR PI+  L  LTED LV +L +PKNAL KQY+ LF + NVKL F  +++++IAKKA  KNTGARGLR+I+E IL   MYE+P +
Sbjct:  299 DLIKFGLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENVKLEFNAESIQLIAKKAINKNTGARGLRSIIEGILLNIMYELPSM 395          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BUCAI (ATP-dependent Clp protease ATP-binding subunit clpX OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=clpX PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 58/97 (59.79%), Postives = 74/97 (76.29%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPEF+GR PI+  L  LTED LV +L +PKNAL KQY+ LF + NVKL F  +++++IAKKA  KNTGARGLR+I+E IL   MYE+P +
Sbjct:  299 DLIKFGLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENVKLEFNAESIQLIAKKAMNKNTGARGLRSIIEGILLNIMYELPSM 395          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BUCA5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 58/97 (59.79%), Postives = 74/97 (76.29%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPEF+GR PI+  L  LTED LV +L +PKNAL KQY+ LF + NVKL F  +++++IAKKA  KNTGARGLR+I+E IL   MYE+P +
Sbjct:  299 DLIKFGLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENVKLEFNAESIQLIAKKAMNKNTGARGLRSIIEGILLNIMYELPSM 395          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ANATD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 56/95 (58.95%), Postives = 77/95 (81.05%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +G+IPEF+GR PI+V+L AL ++ L+K+LTEPKNAL KQY++LF+M+ V+L F + AL  IA KA  +NTGARGLRAI+E I+ + M+EIP
Sbjct:  290 DLLKFGMIPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIADKAIERNTGARGLRAIMEEIMLDVMFEIP 384          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_THEPX (ATP-dependent Clp protease ATP-binding subunit clpX OS=Thermoanaerobacter sp. (strain X514) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 57/95 (60.00%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +G+IPEF+GR PI+V+L  L++D LV++LTEPKNAL KQY++LF ++ VKL F +KAL +IA  A  + TGARGLRAILE I+ + MYEIP
Sbjct:  288 DLLKFGMIPEFIGRVPIVVTLDPLSKDDLVRILTEPKNALTKQYEKLFELDGVKLEFDKKALGLIADMALERKTGARGLRAILEEIMLDVMYEIP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_THEP3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 57/95 (60.00%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +G+IPEF+GR PI+V+L  L++D LV++LTEPKNAL KQY++LF ++ VKL F +KAL +IA  A  + TGARGLRAILE I+ + MYEIP
Sbjct:  288 DLLKFGMIPEFIGRVPIVVTLDPLSKDDLVRILTEPKNALTKQYEKLFELDGVKLEFDKKALGLIADMALERKTGARGLRAILEEIMLDVMYEIP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHEON (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella oneidensis GN=clpX PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 56/97 (57.73%), Postives = 74/97 (76.29%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ YGLIPEF+GR P++ +LT L E+ LV++L+EPKNAL KQY  LF M  V+L F E AL+ IA KA ++ TGARGLR+I+E IL + MY+IP +
Sbjct:  295 DLVKYGLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVEGILLDTMYDIPSI 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHEAM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=clpX PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 55/95 (57.89%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ YGLIPEF+GR P++ +L  L ED L+++L+EPKNAL KQY  LF M NV+L F E AL+ IA+KA ++ TGARGLR+I+E IL + MY++P
Sbjct:  294 DLVKYGLIPEFIGRLPVVATLAELDEDALIQILSEPKNALTKQYAALFEMENVELEFREDALKAIAQKAMSRKTGARGLRSIVEGILLDTMYDLP 388          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_MARAV8.407e-2758.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_IDILO8.407e-2757.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BUCAT8.407e-2759.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BUCAI8.407e-2759.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BUCA58.407e-2759.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ANATD8.407e-2758.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_THEPX1.098e-2660.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_THEP31.098e-2660.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEON1.098e-2657.73ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEAM1.098e-2657.89ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
back to top