CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLONN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium novyi (strain NT) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 51/95 (53.68%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR PI+V+L +L    LV++L EPKNAL KQYK+L  M+NV+L F ++AL+ IA +A  + TGARGLR+I+E  + + M++IP
Sbjct:  288 DLLKFGLIPEFIGRLPIMVTLQSLDNSALVRILKEPKNALVKQYKKLLLMDNVELEFEDEALKAIADEAIERKTGARGLRSIIEETMRDIMFDIP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CELJU (ATP-dependent Clp protease ATP-binding subunit clpX OS=Cellvibrio japonicus (strain Ueda107) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 51/95 (53.68%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ YGLIPEFVGR P++ +L  L +  L+++LTEPKNAL KQY +LF M  V++ F   AL  +A++A  + TGARGLR+I+ES+L + MY IP
Sbjct:  300 DLVRYGLIPEFVGRLPVIATLDELDKAALIQILTEPKNALTKQYGKLFEMEGVQIDFRPDALDAVAERALERKTGARGLRSIMESVLLDTMYRIP 394          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHOBA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodopirellula baltica GN=clpX PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 51/96 (53.12%), Postives = 71/96 (73.96%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 362
            D++ +GLIPE VGR P++  L  L  + L++VLTEPKN+L KQY+ LF+M N +L FTE+AL  IAKKA  K  GARGLR I+E ++ + MY++P+
Sbjct:  342 DILKFGLIPELVGRMPVISYLQPLDLEGLIQVLTEPKNSLVKQYQALFAMENCELEFTEEALHAIAKKAVDKGVGARGLRGIMEDVMLDIMYDLPE 437          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_NOCSJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Nocardioides sp. (strain BAA-499 / JS614) GN=clpX PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 49/95 (51.58%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL  +GLIPEF+GR P++ S++ L ++ LV++LTEP+NAL KQY++LF ++ V+L FT  A+  IA  A  + TGARGLRAI+E +L   MY++P
Sbjct:  297 DLTKFGLIPEFIGRLPLIASVSKLDQEALVQILTEPRNALVKQYQKLFELDGVELEFTPDAIEAIADNALERGTGARGLRAIIEEVLLHVMYDVP 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CYAP8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Cyanothece sp. (strain PCC 8801) GN=clpX PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 49/98 (50.00%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +G+IPEFVGR P++ SL  L E+ L+ +LT+P+NAL KQY++L  M+NV+L F + A+R IA++A  + TGAR LR I+E ++ + MYE+P  K
Sbjct:  318 DLVKFGMIPEFVGRIPVMASLEPLDEETLIAILTQPRNALVKQYQKLLKMDNVQLEFNKDAVRAIAQEAYRRKTGARALRGIVEELMLDVMYELPSRK 415          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CORK4 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=clpX PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 362
            DL+ +GLIPEF+GR P++ ++  L  + LV+VLTEPKN+L KQY RL  M+ V L   E AL  IA KA  + TGARGLRAILE IL   M+E+PD
Sbjct:  294 DLVKFGLIPEFIGRLPVVATVNDLDREALVRVLTEPKNSLVKQYSRLLDMDGVTLTMEEGALNAIADKAIERGTGARGLRAILEEILGPVMFEVPD 389          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BACCR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=clpX PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 51/98 (52.04%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P++ +L  L ED LV +LT+PKNAL KQ+++L  +++V+L F E AL  IAKKA  + TGARGLR+I+E ++ + M+E+P  K
Sbjct:  288 DLLRFGLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAIERKTGARGLRSIIEGLMLDVMFELPSRK 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BACCN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=clpX PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 51/98 (52.04%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P++ +L  L ED LV +LT+PKNAL KQ+++L  +++V+L F E AL  IAKKA  + TGARGLR+I+E ++ + M+E+P  K
Sbjct:  288 DLLRFGLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAIERKTGARGLRSIIEGLMLDVMFELPSRK 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BACC4 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bacillus cereus (strain B4264) GN=clpX PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 51/98 (52.04%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P++ +L  L ED LV +LT+PKNAL KQ+++L  +++V+L F E AL  IAKKA  + TGARGLR+I+E ++ + M+E+P  K
Sbjct:  288 DLLRFGLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAIERKTGARGLRSIIEGLMLDVMFELPSRK 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BACC2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bacillus cereus (strain G9842) GN=clpX PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 51/98 (52.04%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P++ +L  L ED LV +LT+PKNAL KQ+++L  +++V+L F E AL  IAKKA  + TGARGLR+I+E ++ + M+E+P  K
Sbjct:  288 DLLRFGLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAIERKTGARGLRSIIEGLMLDVMFELPSRK 385          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_CLONN1.136e-2353.68ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CELJU1.136e-2353.68ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOBA1.484e-2353.13ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NOCSJ1.484e-2351.58ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CYAP81.484e-2350.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CORK41.484e-2356.25ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BACCR1.484e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BACCN1.484e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BACC41.484e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BACC21.484e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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