CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ACIAC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 53/96 (55.21%), Postives = 71/96 (73.96%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 362
            DLI +GLIPE VGR P++ +L  L+ED LV++LTEPKNAL KQY +L +M  V+L     AL+ IA+KA A+ TGARGLR+ILE  L   M+++P+
Sbjct:  295 DLIKFGLIPELVGRMPVVTALAELSEDALVQILTEPKNALVKQYSKLLAMEGVELEIRPAALKAIARKALARKTGARGLRSILEQSLIGTMFDLPN 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_VARPS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Variovorax paradoxus (strain S110) GN=clpX PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.938e-23
Identity = 53/96 (55.21%), Postives = 70/96 (72.92%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 362
            DLI +GLIPE VGR P++ SL  L+ED LV++LTEPKNA+ KQ+ +L  M  V L     AL+ IA+KA A+ TGARGLR+ILE  L + M+E+P+
Sbjct:  295 DLIKFGLIPELVGRMPVVASLAELSEDALVQILTEPKNAVVKQFTKLLQMEGVDLEIRPAALKAIARKALARKTGARGLRSILEQSLIDTMFELPN 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHEPW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=clpX PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.938e-23
Identity = 50/95 (52.63%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P+L +L  L +  L+++L+EPKNA+ KQ+  LF M +V+L F E AL+ IA KA  + TGARGLR+I+E IL + MY++P
Sbjct:  293 DLVKFGLIPEFIGRLPVLATLAELDDAALIQILSEPKNAITKQFAALFEMEDVELEFREDALKAIALKAQTRKTGARGLRSIVEGILLDIMYDLP 387          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RAT (ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Rattus norvegicus GN=Clpx PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.938e-23
Identity = 52/96 (54.17%), Postives = 74/96 (77.08%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 362
            DLI +G+IPEFVGR P++V L +L E  LV++LTEP+NA+  QY+ LFSM+  +L+ TE AL+ IA+ A  + TGARGLR+I+E +L E M+E+P+
Sbjct:  486 DLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGARGLRSIMEKLLLEPMFEVPN 581          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PONAB (ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Pongo abelii GN=CLPX PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.938e-23
Identity = 52/96 (54.17%), Postives = 74/96 (77.08%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 362
            DLI +G+IPEFVGR P++V L +L E  LV++LTEP+NA+  QY+ LFSM+  +L+ TE AL+ IA+ A  + TGARGLR+I+E +L E M+E+P+
Sbjct:  486 DLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGARGLRSIMEKLLLEPMFEVPN 581          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_POLSQ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.938e-23
Identity = 52/98 (53.06%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E+ L+++LTEPKNAL KQY+ L +M   +L    +AL  IAKKA A+ TGARGLR+ILE  L + MY++P +K
Sbjct:  321 DLIKFGLIPELIGRLPVVATLAQLDEEALIQILTEPKNALVKQYQALLTMEGSELEVRREALSAIAKKAIARKTGARGLRSILEGSLMDVMYDLPSLK 418          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_POLNS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Polynucleobacter necessarius (strain STIR1) GN=clpX PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.938e-23
Identity = 52/98 (53.06%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E+ L+++LTEPKNAL KQY+ L +M   +L    +AL  IAKKA A+ TGARGLR+ILE  L + MY++P +K
Sbjct:  321 DLIKFGLIPELIGRLPVVATLAQLDEEALIQILTEPKNALVKQYQALLTMEGSELEVRREALSAIAKKAIARKTGARGLRSILEGSLMDVMYDLPSLK 418          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MOUSE (ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Mus musculus GN=Clpx PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.938e-23
Identity = 52/96 (54.17%), Postives = 74/96 (77.08%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 362
            DLI +G+IPEFVGR P++V L +L E  LV++LTEP+NA+  QY+ LFSM+  +L+ TE AL+ IA+ A  + TGARGLR+I+E +L E M+E+P+
Sbjct:  487 DLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGARGLRSIMEKLLLEPMFEVPN 582          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LEGPL (ATP-dependent Clp protease ATP-binding subunit clpX OS=Legionella pneumophila (strain Lens) GN=clpX PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.938e-23
Identity = 53/98 (54.08%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI YGLIPEFVGR P++ +L  L E  L+ +LT PKNAL KQ++ LF M   +L F ++AL  IAKKA  +  GARGLR+ILE+IL + MY++P ++
Sbjct:  292 DLIKYGLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFKMEGSELEFRDEALIAIAKKALERKMGARGLRSILENILLDTMYDLPSLE 389          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LEGPC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Legionella pneumophila (strain Corby) GN=clpX PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.938e-23
Identity = 53/98 (54.08%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI YGLIPEFVGR P++ +L  L E  L+ +LT PKNAL KQ++ LF M   +L F ++AL  IAKKA  +  GARGLR+ILE+IL + MY++P ++
Sbjct:  292 DLIKYGLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFKMEGSELEFRDEALIAIAKKALERKMGARGLRSILENILLDTMYDLPSLE 389          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_ACIAC1.484e-2355.21ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VARPS1.938e-2355.21ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEPW1.938e-2352.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RAT1.938e-2354.17ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PONAB1.938e-2354.17ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_POLSQ1.938e-2353.06ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_POLNS1.938e-2353.06ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MOUSE1.938e-2354.17ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LEGPL1.938e-2354.08ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LEGPC1.938e-2354.08ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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