CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURM9 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia mallei (strain NCTC 10229) GN=clpX PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY++LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPTLK 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURM7 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia mallei (strain NCTC 10247) GN=clpX PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY++LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPTLK 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_STRAW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptomyces avermitilis GN=clpX PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23
Identity = 49/98 (50.00%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +G+IPEF+GR P++ S+  L  + L+++L EP+NAL KQY+RLF ++ V+L F  +AL  IA +A  + TGARGLRAI+E +L   MYE+P  K
Sbjct:  295 DLVKFGMIPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRK 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_POLNA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Polaromonas naphthalenivorans (strain CJ2) GN=clpX PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23
Identity = 51/95 (53.68%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPE VGR P++ +L  L+ED LV++LTEPKNA+ KQ+ +L +M  V L     AL+ IA+KA A+ TGARGLR+ILE  L + M+++P
Sbjct:  295 DLIKFGLIPELVGRMPVIATLAELSEDALVQILTEPKNAVVKQFSKLLAMEGVDLEIRPSALKAIARKALARKTGARGLRSILEQSLIDTMFDLP 389          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LACJO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Lactobacillus johnsonii GN=clpX PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23
Identity = 50/95 (52.63%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR PI+ +L  L+ + L+++LTEPKNAL KQYK+L S+++V L FT+ AL+ IA  A ++  GARGLR+I+E+ L + MY  P
Sbjct:  289 DLVKFGLIPEFIGRIPIIATLDKLSTEDLIRILTEPKNALVKQYKKLLSLDDVDLEFTDGALQAIADMAISRRMGARGLRSIVENSLMDVMYRTP 383          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BDEBA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bdellovibrio bacteriovorus GN=clpX PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23
Identity = 50/95 (52.63%), Postives = 68/95 (71.58%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL  +GLIPEF+GR P +  L  L E+ L+ +L  PKNA+ KQY++LFS   V+L FTEKALR +A+ A  + TGARGLR +LE+ + + MY+IP
Sbjct:  293 DLSKFGLIPEFIGRLPAIAVLAPLDEEALLDILVRPKNAITKQYQKLFSFEGVELKFTEKALRAVAQMALKRKTGARGLRGVLETAMLDVMYDIP 387          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_WIGBR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Wigglesworthia glossinidia brevipalpis GN=clpX PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.639e-23
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEFVGR PI+  L  L   +L+++L +PKNAL KQYK LF++  V+L F E AL  IAK++  K TGARGLR+I+E IL + MY +P  K
Sbjct:  295 DLIKFGLIPEFVGRLPIISVLKELNISELIEILIQPKNALVKQYKLLFNLEGVELEFNENALISIAKESLHKKTGARGLRSIIEHILLDTMYSLPSKK 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LEGPH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=clpX PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.639e-23
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI YGLIPEFVGR P++ +L  L E  L+ +LT PKNAL KQ++ LF M   +L F  +AL  IAKKA  +  GARGLR+ILE+IL + MY++P ++
Sbjct:  292 DLIKYGLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFKMEGSELEFRGEALIAIAKKALERKMGARGLRSILENILLDTMYDLPSLE 389          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_GEOMG (ATP-dependent Clp protease ATP-binding subunit clpX OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.639e-23
Identity = 51/95 (53.68%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +G IPEF+GR P+L +L  L E  +V++L EPK+AL KQY++LF M +VKL FT+ +L  IA++A  + TGARGLR+ILE+ + + MYEIP
Sbjct:  291 DLLKFGFIPEFIGRLPVLATLHELDEAAMVQILKEPKSALVKQYQKLFEMEHVKLKFTDGSLVAIAREALKRKTGARGLRSILENAMLDIMYEIP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_DEIRA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Deinococcus radiodurans GN=clpX PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.639e-23
Identity = 52/100 (52.00%), Postives = 74/100 (74.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP--DVK 368
            DL+ +GLIPEFVGR P++V L  L ED L+++LTEP+ A+ KQY+ LF    V L F+E+AL+ +A +A  + TGARGLRA+LE  +T+ ++E+P  DVK
Sbjct:  279 DLVKFGLIPEFVGRLPLVVQLQDLDEDALIRILTEPQGAIIKQYQALFGFQGVDLTFSEEALQEVAHRAKERKTGARGLRAVLEKSMTDLLFELPRDDVK 378          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_BURM93.306e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURM73.306e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STRAW4.318e-2350.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_POLNA4.318e-2353.68ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LACJO4.318e-2352.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BDEBA4.318e-2352.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_WIGBR5.639e-2355.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LEGPH5.639e-2354.08ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_GEOMG5.639e-2353.68ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DEIRA5.639e-2352.00ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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