CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURCH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia cenocepacia (strain HI2424) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY +LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPGALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPTMK 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURCC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia cenocepacia (strain MC0-3) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY +LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPGALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPTMK 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURCA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia cenocepacia (strain AU 1054) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY +LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPGALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPTMK 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MICAN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Microcystis aeruginosa (strain NIES-843) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 49/98 (50.00%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +G+IPEFVGR PIL +L+ L E+ L+ +LT+P+NAL KQY++L  M+NV+L F   A+  IA++A  + TGAR LR I+E ++ + MYE+P  K
Sbjct:  314 DLVKFGMIPEFVGRIPILAALSPLDEEALIAILTQPRNALVKQYQKLLKMDNVQLEFKSDAVLAIAQEAYRRKTGARALRGIVEELMLDVMYELPSRK 411          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LEIXX (ATP-dependent Clp protease ATP-binding subunit clpX OS=Leifsonia xyli subsp. xyli GN=clpX PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 49/95 (51.58%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL  +GLIPEF+GR P++ ++T L +D L+++LTEPKNAL +QY+R+F ++ V+L F   AL  IA  A  + TGARGLRAI+E +L   M+E+P
Sbjct:  295 DLHKFGLIPEFIGRLPVVTTVTQLDQDALMQILTEPKNALVRQYQRMFELDGVQLEFDHAALEAIADLAVLRKTGARGLRAIMEEVLGPIMFEVP 389          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_HERAR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Herminiimonas arsenicoxydans GN=clpX PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 52/96 (54.17%), Postives = 68/96 (70.83%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 362
            DLI +GLIPE VGR P++ +L  L E+ L+++L EPKNAL KQY +L  M   +L     AL+ IAKKA A+ TGARGLR+ILE  L + MYE+P+
Sbjct:  293 DLIKFGLIPELVGRLPVVATLRELDEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIAKKAIARKTGARGLRSILEHALLDVMYELPN 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURCM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY +LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPGALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPAMK 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURA4 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia ambifaria (strain MC40-6) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY +LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPGALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPAMK 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BUCBP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=clpX PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 52/97 (53.61%), Postives = 70/97 (72.16%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPEF+GR PIL  L  L +  LVK+L+EPKNAL KQY+ LF + +V+L    K +  IA+KA  +NTGARGLR+I+E +L + MY +P +
Sbjct:  297 DLIKFGLIPEFIGRLPILTILHELDKKMLVKILSEPKNALIKQYQTLFKLEDVELKICTKVIEYIAQKAMNQNTGARGLRSIIEMLLLDTMYRLPSM 393          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX1_METCA (ATP-dependent Clp protease ATP-binding subunit clpX 1 OS=Methylococcus capsulatus GN=clpX1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI YGLIPEF+GR P++ +L  L E  LV++L EPKNAL KQY RLF M   +L    +AL  IA++A  + TGARGLR I+E  L + MYE+P  +
Sbjct:  293 DLIRYGLIPEFIGRLPVVATLEELDEAALVRILIEPKNALVKQYARLFEMEGCELEILPEALGAIARRAMERKTGARGLRTIIEHALLDTMYELPSAE 390          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_BURCH7.365e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURCC7.365e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURCA7.365e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MICAN9.619e-2350.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LEIXX9.619e-2351.58ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_HERAR9.619e-2354.17ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURCM9.619e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURA49.619e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BUCBP9.619e-2353.61ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX1_METCA9.619e-2353.06ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
back to top