CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BORA1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bordetella avium (strain 197N) GN=clpX PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 52/95 (54.74%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPE VGR P++ +L  L E  LV++LTEPKNAL KQ+++LF+M + +L     AL  IA+KA  + TGARGLR+ILES L + MY++P
Sbjct:  293 DLIKFGLIPELVGRLPVVATLDELDEAALVQILTEPKNALIKQFQKLFAMESAELDIRPDALHAIARKALQRKTGARGLRSILESALLDTMYDLP 387          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_STRCO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptomyces coelicolor GN=clpX PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 49/98 (50.00%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +G+IPEF+GR P++ S+  L  + L+++L EP+NAL KQY+RLF ++ V+L F   AL  IA +A  + TGARGLRAI+E +L   MYE+P  K
Sbjct:  295 DLVKFGMIPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYERLFELDGVELDFERGALEAIADQAILRQTGARGLRAIMEEVLQGVMYEVPSRK 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_KOCRD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=clpX PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 49/95 (51.58%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L+ L+   +V++LTEP+NAL KQY++LF ++ V+L F  +AL  IA+ A  + TGARGLRAILE IL   M+++P
Sbjct:  298 DLLKFGLIPEFIGRLPVVATLSKLSVADMVRILTEPRNALVKQYRKLFQLDGVELTFDPQALEAIAELALERGTGARGLRAILEDILMPVMFDLP 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX1_WOLSU (ATP-dependent Clp protease ATP-binding subunit clpX 1 OS=Wolinella succinogenes GN=clpX1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 46/98 (46.94%), Postives = 75/98 (76.53%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL++YGLIPE +GR  ++ +L  +T++ ++++LT+PKNAL KQY++LF+M+  +L F  +AL  IA+ A  + TGARGLRAI+E +  + MY++P++K
Sbjct:  289 DLVSYGLIPELIGRLHVITTLDEITKEAMLEILTKPKNALVKQYQKLFTMDEAELSFEPEALEAIAELAIKRKTGARGLRAIIEEVTLDLMYDLPELK 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RICAH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rickettsia akari (strain Hartford) GN=clpX PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.143e-22
Identity = 49/98 (50.00%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL  +GLIPEF+GR PI+ +L  L ++ L+ +LT+PKNA+ KQYK+ F +++ +L     AL  IA+KA AK TGARGLR+ILE +L ++MY++ ++K
Sbjct:  289 DLTKFGLIPEFIGRLPIVTTLDELDKEALITILTKPKNAIVKQYKKQFELDDTELVIENSALEAIAEKALAKKTGARGLRSILEHLLLDSMYKVAELK 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ACAM1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acaryochloris marina (strain MBIC 11017) GN=clpX PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.143e-22
Identity = 49/95 (51.58%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +G+IPEF GR P++  + AL ED L ++LTEP+NAL KQY++L  M+ V+L F   A+R IA++A  + TGAR LRAI+E I+ + MYE+P
Sbjct:  315 DLVKFGMIPEFTGRIPVMSVIDALDEDVLCQILTEPRNALVKQYQKLLRMDRVELEFQPDAIRAIAQEAYRRRTGARALRAIVEEIMLDVMYELP 409          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_TROWT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Tropheryma whipplei (strain Twist) GN=clpX PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22
Identity = 49/95 (51.58%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL  +GLIPEF+GR PI+ +++ L  + +++VLTEPKNAL KQYKRLFS++ V L F  +AL  I + A  + TGAR LR+++ESIL+  M+++P
Sbjct:  294 DLRKFGLIPEFIGRLPIVTAISHLDGEDMIRVLTEPKNALVKQYKRLFSLDGVSLGFDHEALEAIVELALKRKTGARALRSVMESILSPIMFDVP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_TROW8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Tropheryma whipplei (strain TW08/27) GN=clpX PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22
Identity = 49/95 (51.58%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL  +GLIPEF+GR PI+ +++ L  + +++VLTEPKNAL KQYKRLFS++ V L F  +AL  I + A  + TGAR LR+++ESIL+  M+++P
Sbjct:  294 DLRKFGLIPEFIGRLPIVTAISHLDGEDMIRVLTEPKNALVKQYKRLFSLDGVSLGFDHEALEAIVELALKRKTGARALRSVMESILSPIMFDVP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_TRIEI (ATP-dependent Clp protease ATP-binding subunit clpX OS=Trichodesmium erythraeum (strain IMS101) GN=clpX PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22
Identity = 49/98 (50.00%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPE +GR P++  +  L E+ L+ +LT+P+NAL KQY++L  M+NVKL F E A+R IAK+A  + TGAR LR I+E ++ + MYE+P  K
Sbjct:  319 DLVKFGLIPELIGRIPMVAVVEPLDEETLMAILTKPQNALVKQYQKLLRMDNVKLEFEEDAVRAIAKEAFRRKTGARALRGIVEELMLDVMYELPSRK 416          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RALEJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Ralstonia eutropha (strain JMP134) GN=clpX PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22
Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  LV++L EPKNAL KQY++L +M  V+L     AL  IA+KA  + TGARGLR+ILE  L + MY++P+ K
Sbjct:  295 DLIKFGLIPELIGRLPVVATLAKLDETALVQILIEPKNALVKQYQKLLAMEGVELEIRPAALSAIARKAIRRKTGARGLRSILEQSLMDVMYDLPNYK 392          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_BORA11.256e-2254.74ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STRCO1.641e-2250.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_KOCRD1.641e-2251.58ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX1_WOLSU1.641e-2246.94ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RICAH2.143e-2250.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACAM12.143e-2251.58ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_TROWT2.799e-2251.58ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_TROW82.799e-2251.58ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_TRIEI2.799e-2250.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RALEJ2.799e-2252.04ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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