CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CAUCR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Caulobacter crescentus GN=clpX PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 63/118 (53.39%), Postives = 78/118 (66.10%), Query Frame = 3
Query:   12 FGTRVTDAAXXXXXXXXXXXX--DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            FG +VTD                DL  +GLIPEF+GR P++ +L  L E  LVK+LTEPKNA  KQY+RLF M N+ L FTE AL  +AKKA A+ TGARGLR+I+E IL E M+E+P
Sbjct:  268 FGAKVTDPEERRTGEILRNVEPDDLQRFGLIPEFIGRLPVVATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLTFTEDALHQVAKKAIARKTGARGLRSIMEGILLETMFELP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CAUCN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 63/118 (53.39%), Postives = 78/118 (66.10%), Query Frame = 3
Query:   12 FGTRVTDAAXXXXXXXXXXXX--DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            FG +VTD                DL  +GLIPEF+GR P++ +L  L E  LVK+LTEPKNA  KQY+RLF M N+ L FTE AL  +AKKA A+ TGARGLR+I+E IL E M+E+P
Sbjct:  268 FGAKVTDPEERRTGEILRNVEPDDLQRFGLIPEFIGRLPVVATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLTFTEDALHQVAKKAIARKTGARGLRSIMEGILLETMFELP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BRASO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bradyrhizobium sp. (strain ORS278) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 56/98 (57.14%), Postives = 77/98 (78.57%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGR P++ +L  L E+ L K+LTEPKNAL KQY+RLF M N++L F ++AL  +++KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  291 DLLKYGLIPEFVGRLPVVATLEDLDENSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVSRKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BAUCH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=clpX PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 55/95 (57.89%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  L+E+ L+++L EPKNAL KQY+ LF++  V+L F+E+AL  IAKKA A+ TGARGLR+I+E IL E MYE+P
Sbjct:  294 DLVKFGLIPEFIGRLPVVATLNELSEEALIRILREPKNALTKQYQALFNLEGVELEFSEEALIAIAKKAMARKTGARGLRSIVEGILLETMYELP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BARQU (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bartonella quintana GN=clpX PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 59/98 (60.20%), Postives = 77/98 (78.57%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEF+GR PI+ +L  L  + LV++L++PKNAL KQY+RLF M NV+L F E ALRVIAKKA  + TGARGLR+I+E IL E M+E+P ++
Sbjct:  293 DLIKFGLIPEFIGRLPIVATLEDLDVNALVQILSQPKNALVKQYQRLFEMENVELAFHEDALRVIAKKAIERKTGARGLRSIMEKILLETMFELPTLE 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ACIBY (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain AYE) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 54/95 (56.84%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  L E+ L+++LTEPKNAL +QY+ LF+M NV L F + ALR +AK+A  +NTGARGLR+ILE++L E MY++P
Sbjct:  292 DLVKFGLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLP 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ACIBT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=clpX PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 54/95 (56.84%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  L E+ L+++LTEPKNAL +QY+ LF+M NV L F + ALR +AK+A  +NTGARGLR+ILE++L E MY++P
Sbjct:  292 DLVKFGLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLP 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ACIBS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain SDF) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 54/95 (56.84%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  L E+ L+++LTEPKNAL +QY+ LF+M NV L F + ALR +AK+A  +NTGARGLR+ILE++L E MY++P
Sbjct:  292 DLVKFGLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLP 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ACIBC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain ACICU) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 54/95 (56.84%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  L E+ L+++LTEPKNAL +QY+ LF+M NV L F + ALR +AK+A  +NTGARGLR+ILE++L E MY++P
Sbjct:  292 DLVKFGLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLP 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ACIB5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain AB0057) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 54/95 (56.84%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  L E+ L+++LTEPKNAL +QY+ LF+M NV L F + ALR +AK+A  +NTGARGLR+ILE++L E MY++P
Sbjct:  292 DLVKFGLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLP 386          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_CAUCR1.434e-2653.39ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CAUCN1.434e-2653.39ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRASO1.434e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BAUCH1.434e-2657.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BARQU1.434e-2660.20ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIBY1.434e-2656.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIBT1.434e-2656.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIBS1.434e-2656.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIBC1.434e-2656.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIB51.434e-2656.84ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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