CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHIE6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium etli (strain CIAT 652) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 56/98 (57.14%), Postives = 77/98 (78.57%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P+L +L  L ED L+++L+EPKNAL KQY+RLF M +V+L F E ALR IA+KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  294 DLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKTGARGLRSIMEKILLDTMFELPTLE 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PSEA6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 54/97 (55.67%), Postives = 76/97 (78.35%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ YGLIPEF+GR P+L SL  L+E+ L+++L EPKN+L KQY  LFS+ + +L F E AL+ IAKKA ++ TGARGLR+I+E++L + MYE+P +
Sbjct:  295 DLVKYGLIPEFIGRLPVLTSLEELSEEALIQILREPKNSLTKQYAALFSLEDTELEFREDALQAIAKKAMSRKTGARGLRSIVEAVLLDTMYELPSM 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PHEZH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Phenylobacterium zucineum (strain HLK1) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 57/95 (60.00%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  L E  LVK+LTEPKNA  KQY RLF M NV L FTE AL  +A+KA  + TGARGLR+ILE +L + MYE+P
Sbjct:  291 DLLRFGLIPEFIGRLPVIATLDDLDEKALVKILTEPKNAFVKQYVRLFEMENVGLTFTEDALMAVARKAIQRKTGARGLRSILEGVLLDTMYELP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_NITHX (ATP-dependent Clp protease ATP-binding subunit clpX OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 57/98 (58.16%), Postives = 76/98 (77.55%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGR P++ +L  L E  L K+LT+PKNAL KQY+RLF M N++L F ++AL  IA+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  291 DLLKYGLIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAIARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_HYDS0 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=clpX PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 58/97 (59.79%), Postives = 73/97 (75.26%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPEFVGR P++  L  LTE+ L+++LTEPKNA+ KQYK L  M  + L FTE ALR IAK+A  + TGARGLRAI+E I+T+ MYE P +
Sbjct:  281 DLINFGLIPEFVGRLPVISVLNELTEEDLIRILTEPKNAVIKQYKELLRMEGIGLEFTEGALREIAKEAIKRKTGARGLRAIVEKIMTDIMYEAPSL 377          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BRAJA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bradyrhizobium japonicum GN=clpX PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 56/98 (57.14%), Postives = 76/98 (77.55%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGR P++ +L  L E  L K+LTEPKNAL KQY+RLF M N++L F ++AL  +A+KA  + TGARGLR+ILE+IL E M+++P ++
Sbjct:  291 DLLKYGLIPEFVGRLPVVATLEDLDETSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILEAILLETMFDLPGLE 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BARHE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bartonella henselae GN=clpX PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR PI+ +L  L  + LV++L++PKNAL KQY+RLF M NV+L F E ALRVIAKKA  + TGARGLR+I+E IL E M+E+P
Sbjct:  293 DLIKFGLIPEFIGRLPIVATLEDLDVNALVQILSKPKNALVKQYQRLFEMENVELAFHEDALRVIAKKAIERKTGARGLRSIMEKILLETMFELP 387          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHOPS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodopseudomonas palustris (strain BisB5) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 56/98 (57.14%), Postives = 76/98 (77.55%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGR P++ +L  L E  L K+LT+PKNAL KQY+RLF M N++L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  291 DLLKYGLIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHOPB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodopseudomonas palustris (strain BisB18) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 56/98 (57.14%), Postives = 76/98 (77.55%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGR P++ +L  L E  L K+LT+PKNAL KQY+RLF M N++L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  291 DLLKYGLIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHOP5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodopseudomonas palustris (strain BisA53) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 56/98 (57.14%), Postives = 76/98 (77.55%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGR P++ +L  L E  L K+LT+PKNAL KQY+RLF M N++L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  291 DLLKYGLIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_RHIE62.446e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSEA62.446e-2655.67ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PHEZH2.446e-2660.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NITHX2.446e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_HYDS02.446e-2659.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRAJA2.446e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BARHE2.446e-2662.11ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOPS3.195e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOPB3.195e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOP53.195e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
back to top