CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHOP2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodopseudomonas palustris (strain HaA2) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 56/98 (57.14%), Postives = 76/98 (77.55%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGR P++ +L  L E  L K+LT+PKNAL KQY+RLF M N++L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  291 DLLKYGLIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHISN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium sp. (strain NGR234) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 56/98 (57.14%), Postives = 77/98 (78.57%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P+L +L  L ED L+++L+EPKNAL KQY+RLF M +V+L F E ALR IAK+A  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  294 DLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIAKRAIIRKTGARGLRSIMEKILLDTMFELPTLE 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_OCEIH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Oceanobacillus iheyensis GN=clpX PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 54/95 (56.84%), Postives = 78/95 (82.11%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ YGLIPEF+GR P++ SLT L E+ L+++LT+PKNAL KQY++LF +++V+L F E+AL+ IAKKA  + TGARGLR+I+E I+ + M++IP
Sbjct:  288 DLLRYGLIPEFIGRIPVIGSLTPLDEEALIEILTKPKNALVKQYQKLFEIDHVELEFEEEALQEIAKKAIERKTGARGLRSIIEGIIVDVMFDIP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_NITWN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 56/98 (57.14%), Postives = 76/98 (77.55%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGR P++ +L  L E  L K+LT+PKNAL KQY+RLF M N++L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  291 DLLKYGLIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_METEP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium extorquens (strain PA1) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 56/99 (56.57%), Postives = 78/99 (78.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 371
            DL+ +GLIPEFVGR P+L +L  L E+ L K+L EPKNAL KQY+RLF M NV+L F ++AL ++A+KA  + TGARGLR+ILE+IL + MY++P +++
Sbjct:  291 DLLKFGLIPEFVGRLPVLATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVELTFQDEALSLVARKAIERKTGARGLRSILETILLDTMYDLPGLES 389          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_METC4 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 56/99 (56.57%), Postives = 78/99 (78.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 371
            DL+ +GLIPEFVGR P+L +L  L E+ L K+L EPKNAL KQY+RLF M NV+L F ++AL ++A+KA  + TGARGLR+ILE+IL + MY++P +++
Sbjct:  291 DLLKFGLIPEFVGRLPVLATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVELTFQDEALSLVARKAIERKTGARGLRSILETILLDTMYDLPGLES 389          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MAGSM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Magnetococcus sp. (strain MC-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 56/95 (58.95%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+A+GLIPEFVGR P++ +L  L+++ LV++LTEPKNAL KQY++L  M NVKL FT+ AL  +A++A  + TGARGLRA+LES L + M+EIP
Sbjct:  292 DLLAFGLIPEFVGRLPVVATLEELSKEALVRILTEPKNALVKQYQKLLEMENVKLTFTDGALEALAQRAIERKTGARGLRALLESTLLDIMFEIP 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_EUBE2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 56/99 (56.57%), Postives = 77/99 (77.78%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 371
            DLI +GLIPEFVGR P++VSL +L E+ LV++L EPKNA+ KQY+ LF ++ V L FT++A+  +A K+  + TGARGLR+ILES++ E MYEIP  +T
Sbjct:  294 DLIKFGLIPEFVGRVPVVVSLDSLDEEALVRILKEPKNAIIKQYQALFGLDEVALEFTDEAVEAVAHKSFERKTGARGLRSILESVMNEVMYEIPSDET 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_DICT6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 55/97 (56.70%), Postives = 77/97 (79.38%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +G+IPEFVGRFP++  L  L+E+ L+K+LTEPKNAL KQYK L S+  V++ FT++ALR I K+A  K TGARGLRA++E ++ + MYE+P++
Sbjct:  287 DLIKFGMIPEFVGRFPVVAVLEPLSEEALLKILTEPKNALVKQYKALLSIEGVEIDFTDEALRSIVKEALEKATGARGLRAVMEELMLDLMYELPNL 383          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ZYMMO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Zymomonas mobilis GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 56/98 (57.14%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P+L +L  L +  LV++LTEPKNAL KQY++LF + + KL FTE AL  IAKK   + TGARGLR+ILE IL + M+E+P ++
Sbjct:  291 DLLKFGLIPEFVGRLPVLATLEDLDQSALVRILTEPKNALVKQYQKLFELEDAKLEFTEDALAAIAKKGIERKTGARGLRSILEGILLDTMFELPSLE 388          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_RHOP23.195e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHISN3.195e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_OCEIH3.195e-2656.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NITWN3.195e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METEP3.195e-2656.57ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METC43.195e-2656.57ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MAGSM3.195e-2658.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_EUBE23.195e-2656.57ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DICT63.195e-2656.70ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ZYMMO4.173e-2657.14ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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