CX299938
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 8.180e-18 Identity = 58/125 (46.40%), Postives = 74/125 (59.20%), Query Frame = 1 Query: 28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 372 W AG EG YLG P +++ I +V+++G IE R LDP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGP+ N A H++DP+ Sbjct: 129 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPV 249
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.068e-17 Identity = 57/126 (45.24%), Postives = 75/126 (59.52%), Query Frame = 1 Query: 28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375 W AG EG YLG P +++ I +V+++G IE R +DP LYPGG F DPLGLA DPE A +++ E+K+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 130 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDP---LYPGGTF-DPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.068e-17 Identity = 58/126 (46.03%), Postives = 74/126 (58.73%), Query Frame = 1 Query: 28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375 W AG EG YLG P +++ I +V+++G IE R DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL+N HL+DP++ Sbjct: 132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVN 253
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.068e-17 Identity = 57/126 (45.24%), Postives = 74/126 (58.73%), Query Frame = 1 Query: 28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375 W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ IK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.068e-17 Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = 1 Query: 61 GSSYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375 G YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 144 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.395e-17 Identity = 56/126 (44.44%), Postives = 74/126 (58.73%), Query Frame = 1 Query: 28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375 W AG EG YLG P +++ I +V+++G +E R DP +YPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGP+ N A HL+DP++ Sbjct: 139 WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 260
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.395e-17 Identity = 58/125 (46.40%), Postives = 73/125 (58.40%), Query Frame = 1 Query: 28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 372 W AG EG YLG P +++ I +V+++G IE R LDP LYPG F DPLGLA DPE KA L++ EIK+ RLAM + GF VQA+VTGKGP+ N HL+DP+ Sbjct: 15 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGDAF-DPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 135
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17 Identity = 57/126 (45.24%), Postives = 74/126 (58.73%), Query Frame = 1 Query: 28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSE------LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375 W AG EG YLG P +++ I +VL++G +E R + +DP LYPGG F DPLGLA DPE A L++ E K+ RLAM + GF +QA+VTGKGPL N A HL DP++ Sbjct: 132 WLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVN 253
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17 Identity = 56/126 (44.44%), Postives = 74/126 (58.73%), Query Frame = 1 Query: 28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375 W AG EG YLG P +++ I +V+++G +E R DP +YPGG F DPLGLA DPE A L++ E+K+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 71 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 192
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17 Identity = 56/126 (44.44%), Postives = 74/126 (58.73%), Query Frame = 1 Query: 28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375 W AG EG YLG P +++ I +V+++G +E R DP +YPGG F DPLGLA DPE A L++ E+K+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 120 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 241 The following BLAST results are available for this feature:
BLAST of CX299938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299938 ID=CX299938; Name=CX299938; organism=Citrus clementina; type=EST; length=575bpback to top |