CX299938

Overview
NameCX299938
Unique NameCX299938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299938_ssr448 microsatellite CX299938_ssr448:448..462. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4991 contig Ccv1_Contig4991:537..1087. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.180e-18
Identity = 58/125 (46.40%), Postives = 74/125 (59.20%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 372
            W  AG     EG   YLG P      +++ I   +V+++G IE  R         LDP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A H++DP+
Sbjct:  129 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPV 249          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.068e-17
Identity = 57/126 (45.24%), Postives = 75/126 (59.52%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +V+++G IE  R         +DP   LYPGG F DPLGLA DPE  A +++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDP---LYPGGTF-DPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.068e-17
Identity = 58/126 (46.03%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +V+++G IE  R          DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL+N   HL+DP++
Sbjct:  132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVN 253          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.068e-17
Identity = 57/126 (45.24%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++  IK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.068e-17
Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   61 GSSYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            G  YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  144 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.395e-17
Identity = 56/126 (44.44%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  139 WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 260          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.395e-17
Identity = 58/125 (46.40%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 372
            W  AG     EG   YLG P      +++ I   +V+++G IE  R         LDP   LYPG  F DPLGLA DPE KA L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:   15 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGDAF-DPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 135          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17
Identity = 57/126 (45.24%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSE------LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +VL++G +E  R +       +DP   LYPGG F DPLGLA DPE  A L++ E K+ RLAM +  GF +QA+VTGKGPL N A HL DP++
Sbjct:  132 WLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVN 253          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17
Identity = 56/126 (44.44%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   71 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 192          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17
Identity = 56/126 (44.44%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  120 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 241          
The following BLAST results are available for this feature:
BLAST of CX299938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB21_LEMGI8.180e-1846.40Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB29_MAIZE1.068e-1745.24Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB27_TOBAC1.068e-1746.03Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC1.068e-1745.24Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_NICPL1.068e-1747.37Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB2B_PINSY1.395e-1744.44Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_PINSY1.395e-1746.40Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB22_PETSP1.822e-1745.24Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_CUCSA1.822e-1744.44Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA1.822e-1744.44Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC07004C02SK SaltLeaf1 Citrus clementina cDNA clone C07004C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299938 ID=CX299938; Name=CX299938; organism=Citrus clementina; type=EST; length=575bp
ACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGA
GTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTCCATTCTCAATAA
CAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTACATTGAGTTCCAA
AGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTT
TTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTC
AATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTTGCATTCCTTGGC
TTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCTCAACAACTGGGC
TACCCACTTGAGCGATCCTCTTCACACAACCATTCTTGACACCTTCATCT
CTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTTGGCACTATTGTTA
TTATTATTATTATATGCGCCTATCTTGTAAAAAGAATTATAACATTTGAC
AGCTTAAGGGGAATGCTATGGCTTCATATTTTGAAGTCATTTCATCTTTG
CAGAAAAAAAAAAAAAAAAAAAAAA
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