CX299941

Overview
NameCX299941
Unique NameCX299941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1541..2220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_RHILO (Glycogen synthase OS=Rhizobium loti GN=glgA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEE 309
            SRFEPCGL QL+ +RYG VP+VA TGGL DT+ +          +   +   P +  A+   +RR +  Y   A  E + + GM  D+SW   A+K+ E
Sbjct:  373 SRFEPCGLTQLYGLRYGCVPVVARTGGLADTIIDANEAAMAAGVATGLQFA-PNNGGAMLHAIRRLVDAYADPAAFETIQRQGMKADVSWDKSAEKYLE 470          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_DESAP (Glycogen synthase OS=Desulforudis audaxviator (strain MP104C) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 42/115 (36.52%), Postives = 61/115 (53.04%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEETLLN-LEVAGSEPGI 351
            SRFEPCGL QL ++RYGT+PIV  TGGL DTV E    + + +   +       D  A+ + + RAL  Y    +A   +++N M  D SW   A ++ +   + +E    E GI
Sbjct:  387 SRFEPCGLGQLISLRYGTIPIVRETGGLADTVNE----YDLATGGGNGFVFKEYDARALYSAIARALKLYREDQEAWGRLVRNAMEMDFSWARSAVEYLQVYRDAMEKVSEERGI 497          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_DEIGD (Glycogen synthase OS=Deinococcus geothermalis (strain DSM 11300) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 303
            SRFEPCGL Q+ A+RYGT+PIV  TGGLVDTV  G  GF+    + +          A++T  R A  T          MK GM  D SW+G A+ +
Sbjct:  351 SRFEPCGLSQMIALRYGTLPIVRETGGLVDTV-PGDVGFRFADATTE----------ALATACRDARTTLEDVVEWQSRMKRGMELDFSWEGSARHY 436          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_CLOPH (Glycogen synthase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 44/106 (41.51%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALA--EMMKNGMAQDLSWKGPAKKWEE 309
            S FEPCGL QL ++RYGTVPIV  TGGLVDTV      E   TGF   +++             +  T+R A   Y  +     +++  GMA+D SWK  A+K+EE
Sbjct:  378 SLFEPCGLSQLMSLRYGTVPIVRETGGLVDTVEPYNQHESTGTGFTFKNYNAH----------EMLYTIRFAKEIYQDKKREWNKIIDRGMAKDFSWKTSARKYEE 473          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_AZOSE (Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 45/112 (40.18%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE-GFTGFQMGSFS--VDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGS 339
            SRFEPCGL Q+++ RYGT PIV +TGGLVD+V +    G   G  S  +  EA      AA+   V RAL  +  + A   +  NGMA+D SW G A ++    + +  A +
Sbjct:  386 SRFEPCGLNQMYSQRYGTPPIVRATGGLVDSVGDFSVDGLHRGEASGFLFAEATP----AALVEAVDRALKVFADRVAWRTLCCNGMARDFSWGGSAGRYARLYVAMRAAAA 493          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_AGRRK (Glycogen synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 303
            SRFEPCGL QL+ +RYG VPIVA TGGL DT+ +          +   +   PV    +   +RRA+  +  + +  +M K GM  D+SW   A+++
Sbjct:  373 SRFEPCGLTQLYGLRYGCVPIVARTGGLNDTIIDANHAALQAKVATGIQ-FSPVTAEGLLQAIRRAIYLFQDRKVWTQMQKQGMKSDVSWGKSAERY 468          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA1_RHIME (Glycogen synthase 1 OS=Rhizobium meliloti GN=glgA1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 39/100 (39.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEA---VDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 303
            SRFEPCGL QL+ +RYG VP+VA TGGL DT+ +        + S  C       PV    +   +RR L  Y    L A +   GM  D+SW   A+++
Sbjct:  374 SRFEPCGLTQLYGLRYGCVPVVARTGGLTDTIIDA----NEAALSAKCATGFHFLPVTTDGLRLAIRRVLRAYNEPKLWARLQYQGMKSDVSWAKSAERY 469          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA1_GEOSL (Glycogen synthase 1 OS=Geobacter sulfurreducens GN=glgA1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 1
Query:    1 FYFDSSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 309
            F+   S FEPCGL Q++++RYGT+PIV +TGGL D+V    E+  TG     +S D +A+       V T  RR        A+A ++ N MA+  +W+  A ++EE
Sbjct:  380 FFVMPSAFEPCGLNQMYSLRYGTLPIVRATGGLDDSVENFDEQNLTGNGFKFWSHDADALFDTVGWTVHTWYRR------KDAMAALIGNAMAKRFTWEDSAARYEE 480          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_SYNS9 (Glycogen synthase OS=Synechococcus sp. (strain CC9902) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 48/130 (36.92%), Postives = 68/130 (52.31%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS-FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 399
            SRFEPCG+ QL+AMRYG+VP+V + GGLVDTV         G+ F  D    +PVD    +  VR   A     +  ++ K GM +D SW   A +++  L+  +V G  EP  D   +   ++   A P
Sbjct:  355 SRFEPCGISQLYAMRYGSVPVVRNVGGLVDTVPPHDPNADRGTGFCFD--RFEPVDF--YTALVRAWEAYRHRSSWQDLQKRGMTEDYSWDRSAVEYD--LMYKDVCGIKEPTPDAALLEQFSRGQDADP 478          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_PROM1 (Glycogen synthase OS=Prochlorococcus marinus (strain NATL1A) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 50/130 (38.46%), Postives = 67/130 (51.54%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS-FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 399
            SRFEPCG+ QL AMRYG +PIV   GGLVDTVE      + GS F  D    +P+D    ++ VR   A    ++  E+    M+   SW   AK++E  L+  +V G  EP  D  E+   +    A P
Sbjct:  355 SRFEPCGISQLLAMRYGAIPIVRKVGGLVDTVEPYNPMNETGSGFCFD--RYEPIDF--YTSLVRSWEAYRHQKSWKELQLRAMSNKYSWDRSAKEYE--LMYKDVCGIKEPSPDAAEVEKFSYGQEADP 478          
The following BLAST results are available for this feature:
BLAST of CX299941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
GLGA_RHILO3.570e-1138.38Glycogen synthase OS=Rhizobium loti GN=glgA PE=3 S... [more]
GLGA_DESAP3.570e-1136.52Glycogen synthase OS=Desulforudis audaxviator (str... [more]
GLGA_DEIGD3.570e-1143.30Glycogen synthase OS=Deinococcus geothermalis (str... [more]
GLGA_CLOPH3.570e-1141.51Glycogen synthase OS=Clostridium phytofermentans (... [more]
GLGA_AZOSE3.570e-1140.18Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN... [more]
GLGA_AGRRK3.570e-1138.14Glycogen synthase OS=Agrobacterium radiobacter (st... [more]
GLGA1_RHIME3.570e-1139.00Glycogen synthase 1 OS=Rhizobium meliloti GN=glgA1... [more]
GLGA1_GEOSL3.570e-1138.32Glycogen synthase 1 OS=Geobacter sulfurreducens GN... [more]
GLGA_SYNS94.663e-1136.92Glycogen synthase OS=Synechococcus sp. (strain CC9... [more]
GLGA_PROM14.663e-1138.46Glycogen synthase OS=Prochlorococcus marinus (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004C05SK SaltLeaf1 Citrus clementina cDNA clone C07004C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299941 ID=CX299941; Name=CX299941; organism=Citrus clementina; type=EST; length=680bp
TTTTATTTTGATTCCAGCAGATTTGAACCTTGTGGTCTCATTCAATTACA
TGCCATGCGTTATGGAACCGTACCTATCGTGGCTTCCACTGGTGGTTTGG
TTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGATGGGAAGCTTCAGT
GTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCTGCAGTGTCCACAAC
CGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGCTTTGGCTGAAATGA
TGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAGGACCAGCTAAGAAA
TGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGTAGTGAACCTGGAAT
TGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAATGTGGCCACTCCTT
GATCGAGGCTACAAAAATCTCCACTTTTATTTTGGACCGCAAACATGTTC
CTGTAATTCTCCACAACCCAAGATATTACTTAGGAAATAACATAGGTTGG
CAGTATATGCAGCATGCGCTATTTTCAATAATGGTTTGGAGTTGAGACAT
TAGTGTTTACCTTGTATAATGAAATATTAAGTTCTGTTTTACAGTTTTGT
AAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAATGAAAAAGTTCAAC
TGAACAAGTTTATAAAAAAAAAAAAAAAAA
back to top