CX299942

Overview
NameCX299942
Unique NameCX299942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9765 contig Ccv1_Contig9765:362..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299942 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = 1 
Query:    7 LKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTP 480
            LKW+ +AEL++GRWAM  V G+ + + ++ I       W++AG +       S  +L   + +L  +VE +RW D  NP S + +         + ++   GE GYPGG  F+PL  A T                K  E+ + RLAM+A L F  +    GK P
Sbjct:   89 LKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPKGEVGYPGG-IFNPLNFAPT-------------QEAKEKELANGRLAMLAFLGFVVQHNVTGKGP 230
The following BLAST results are available for this feature:
BLAST of CX299942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CB24_ARATH2.098e-1131.52Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC07004C06SK SaltLeaf1 Citrus clementina cDNA clone C07004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299942 ID=CX299942; Name=CX299942; organism=Citrus clementina; type=EST; length=591bp
GCATTCCTGAAATGGTACAGAGAAGCAGAACTGATCCACGGACGATGGGC
AATGGCTGCAGTTGTTGGGATATTCGTCGGACAGGCGTGGAGTGGGATTC
CATGGTTCGAGGCTGGAGCAGATCCTGGAGCCATAGCACCCTTCTCCTTC
GGCTCACTCCTGGGAACCCAGCTTCTCCTTATGGGTTGGGTTGAGAGCAA
GCGGTGGGTTGATTTTTTCAATCCTGAATCTCAATCAGTTGAATGGGCAA
CACCTTGGTCAAGAACTGCTGAAAACTTTGCCAATGCGACTGGTGAACAA
GGCTACCCTGGTGGAAAGTTTTTTGATCCCTTATGTTTGGCTGGAACAAT
TAAGGATGGTGTCTACATTCCTGACACTGAGAAGCTTGACAGGCTCAAAG
TTGCTGAGATTAAACATGCTAGGCTTGCTATGGTGGCCATGTTGATTTTC
TACTTTGAAGCTGGCCAAGGCAAGACGCCACTTGGGGCTCTTGGTTTGTA
AAACATGCTTATGTAGATAACTCACTGATTGGTGTTAAAGCGTAATCAAT
CGGATGTATATGAGTTCCCTCAAAAAAAAAAAAAAAAAAAA
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