CX299943

Overview
NameCX299943
Unique NameCX299943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_VIBF1 (Glycine cleavage system H protein OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=gcvH PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 62/122 (50.82%), Postives = 85/122 (69.67%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            LK+ +SHEWV+  G    TVGI+DHAQ  LG+VVFV+LPE    V  G GF +VESVKA SD+ SP++G ++E+N +L ++P LVN  PYE GW+ ++K S  S+LESL+    Y +  +EE
Sbjct:    5 LKFTTSHEWVRDNGDGTVTVGISDHAQGLLGDVVFVDLPEVDDEVTTGEGFSLVESVKAASDIYSPVTGVIVEINEELEDSPELVNEEPYESGWIARIKLSDSSELESLIPSDTYLESLDEE 126          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_THET8 (Glycine cleavage system H protein OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=gcvH PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 60/119 (50.42%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  154 YASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            Y  +HEW   EG    VGITD+AQD LG+VV+VELPE G  V++G    VVESVK  SD+ +P++GE++EVN  L +TP LVN  PY EGW+ ++KP    DL+ L+D   Y +  E E
Sbjct:    9 YTKTHEWALPEGDTVLVGITDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDMGDLDELLDAGGYQEVLESE 127          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_SHELP (Glycine cleavage system H protein OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gcvH PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 64/128 (50.00%), Postives = 89/128 (69.53%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGSVA-TVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            S++   LKYASSHEW++ E   + TVGI++HAQ+ LG++VFVELPE G SV  G    V ESVKA SD+ +P+SGEV+ VN  L ++P LVNS  Y +GW  ++ PS  S+L++L+D + Y    +EE
Sbjct:    2 SNIPTELKYASSHEWIRREEDGSYTVGISEHAQELLGDMVFVELPEVGDSVSAGDDCAVAESVKAASDIYAPVSGEVVAVNEALEDSPELVNSDAYGDGWFFRIMPSDLSELDNLLDAEGYQAVIDEE 129          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_SHEDO (Glycine cleavage system H protein OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=gcvH PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 64/127 (50.39%), Postives = 89/127 (70.08%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGSVA-TVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 507
            S++   LK+ASSHEWV+ E   + TVGIT+HAQ+ LG++VFVELPE G SV  G    V ESVKA SD+ +PISGEV+ VN+ L ++P LVNS  Y +GW  ++ PS  S++++L+D + Y    +E
Sbjct:    2 STIPTDLKFASSHEWVRKEDDGSYTVGITEHAQELLGDMVFVELPEVGDSVSAGAECAVAESVKAASDIYAPISGEVVAVNSSLEDSPELVNSDAYGDGWFFRIMPSDESEVDALLDAEGYQDVIDE 128          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_BACHD (Glycine cleavage system H protein OS=Bacillus halodurans GN=gcvH PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 63/127 (49.61%), Postives = 84/127 (66.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            S++ + LKY+  HEWVK EG    +GITD AQ  LG++VFVELPE G  V+    FG VESVK  S++ +P+SG+V+EVN +L + P  VN SPYE+ W+I V+PS  S +E LM    Y +   EE
Sbjct:    2 SNLPNELKYSEEHEWVKVEGDKVRIGITDFAQSELGDIVFVELPEVGDEVEADEPFGSVESVKTVSELYAPVSGKVVEVNEELDDNPEYVNESPYEKAWMIVVEPSDASQVEELMSADEYKEMISEE 128          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_VIBCM (Glycine cleavage system H protein OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gcvH PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            LK+  SHEWV+  G    T+GI++HAQ+ LG+VVFVELPE  A +  G  F +VESVKA SD+ +P++G VIEVN  L  +P L+N  PY+ GW++KVK S P +L+ L D + Y    EE+
Sbjct:    5 LKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVNEDLQNSPELINEEPYDGGWIVKVKMSDPDELKDLKDAEEYLASIEED 126          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_VIBCH (Glycine cleavage system H protein OS=Vibrio cholerae GN=gcvH PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            LK+  SHEWV+  G    T+GI++HAQ+ LG+VVFVELPE  A +  G  F +VESVKA SD+ +P++G VIEVN  L  +P L+N  PY+ GW++KVK S P +L+ L D + Y    EE+
Sbjct:    5 LKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVNEDLQNSPELINEEPYDGGWIVKVKMSDPDELKDLKDAEEYLASIEED 126          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_VIBC3 (Glycine cleavage system H protein OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=gcvH PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            LK+  SHEWV+  G    T+GI++HAQ+ LG+VVFVELPE  A +  G  F +VESVKA SD+ +P++G VIEVN  L  +P L+N  PY+ GW++KVK S P +L+ L D + Y    EE+
Sbjct:    5 LKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVNEDLQNSPELINEEPYDGGWIVKVKMSDPDELKDLKDAEEYLASIEED 126          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_SODGM (Glycine cleavage system H protein OS=Sodalis glossinidius (strain morsitans) GN=gcvH PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN 513
            S+V   LKY +SHEWV +EG  V  VGIT+HAQ+ LG++VF++LPE GA+   G    V ESVKA SD+ +PISGE++ VN  L  +P LVNS+PY +GWL K+K +  S++  L+D  AY    +EE+
Sbjct:    2 SNVPTELKYTASHEWVLNEGDGVYCVGITEHAQELLGDMVFMDLPEVGATFSAGEDCAVAESVKAASDIYAPISGEIVAVNDDLEASPELVNSAPYTDGWLFKIKATDDSEVNELLDAAAYQAAIDEED 130          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_SHEFN (Glycine cleavage system H protein OS=Shewanella frigidimarina (strain NCIMB 400) GN=gcvH PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 65/128 (50.78%), Postives = 89/128 (69.53%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGSVA-TVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            S++   LKYASSHEW++ E   + TVGIT+HAQ+ LG++VFVELPE G +V  G    V ESVKA SD+ +PISGEVI VN  L ++P LVNS  + +GW  +V PS  S++++L+D   Y +  +EE
Sbjct:    2 STIPADLKYASSHEWIRKESDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGEDCAVAESVKAASDIYAPISGEVIAVNESLEDSPELVNSDAFGDGWFFRVMPSDESEVDALLDADGYQEVIDEE 129          
The following BLAST results are available for this feature:
BLAST of CX299943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_VIBF13.682e-3050.82Glycine cleavage system H protein OS=Vibrio fische... [more]
GCSH_THET83.682e-3050.42Glycine cleavage system H protein OS=Thermus therm... [more]
GCSH_SHELP3.682e-3050.00Glycine cleavage system H protein OS=Shewanella lo... [more]
GCSH_SHEDO3.682e-3050.39Glycine cleavage system H protein OS=Shewanella de... [more]
GCSH_BACHD3.682e-3049.61Glycine cleavage system H protein OS=Bacillus halo... [more]
GCSH_VIBCM4.809e-3050.00Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_VIBCH4.809e-3050.00Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_VIBC34.809e-3050.00Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_SODGM4.809e-3050.39Glycine cleavage system H protein OS=Sodalis gloss... [more]
GCSH_SHEFN4.809e-3050.78Glycine cleavage system H protein OS=Shewanella fr... [more]

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Properties
Property NameValue
Genbank descriptionC07004C07SK SaltLeaf1 Citrus clementina cDNA clone C07004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299943 ID=CX299943; Name=CX299943; organism=Citrus clementina; type=EST; length=610bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGTTGGCATCACTGATCATGCCCAGGATCATCTTGGAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCAGTCAAACAAGGCGGCGGCTTCGGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAACACCAAGCTCACTGAAACGCCTGGCTTGGTCA
ATTCAAGCCCATATGAAGAAGGATGGCTGATAAAGGTGAAGCCTAGCAGC
CCTTCGGATTTAGAATCCTTGATGGATCCACAGGCTTACACGAAATTTTG
CGAAGAAGAAAATGCAGCTCATTAGAATCTTCACATTGTTTCATTTTCTT
TTCCCAAAACATACTAATAAATCTCTTTGTTTTACTCGCTAAAAAAAAAA
AAAAAAAAAA
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