CX299943

Overview
NameCX299943
Unique NameCX299943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig819 contig Ccv1_Contig819:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_CHLPB (Glycine cleavage system H protein OS=Chlorobium phaeobacteroides (strain BS1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.295e-22
Identity = 55/120 (45.83%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  142 DGLKYASSHEWVK--HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTK 495
            D L+Y S HEWVK   +G V  VGITD AQ  LG++VFVE    G  +KQ   FG VE+VK  +D+ +P++G++  VN  L +   +VNSSPY+EGW+I++    P  + +LM  Q Y K
Sbjct:    5 DDLRYTSDHEWVKVLDDGKVR-VGITDFAQSELGDIVFVETKPVGTVLKQQDIFGTVEAVKTVADLFAPVTGKINAVNDAL-DAAEIVNSSPYDEGWMIEIIVDDPEQVNALMTVQEYKK 122          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_CLAMS (Glycine cleavage system H protein OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=gcvH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.222e-22
Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVK 441
            L+Y + HEWV  +G VATVGIT +A D LG+VVFVELP  G  +  G   G +ES K+  ++ +PI G V EVN  +  +P LVNS P+  GWL+KV+
Sbjct:    7 LQYTAEHEWVLIDGDVATVGITSYAADKLGDVVFVELPAVGDELAGGSVVGEIESTKSVGELFAPIDGTVTEVNDDVVASPDLVNSDPFGAGWLVKVR 104          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_STRGG (Glycine cleavage system H protein OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=gcvH PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.074e-21
Identity = 52/117 (44.44%), Postives = 77/117 (65.81%), Query Frame = 1
Query:  148 LKYASSHEWVKH-EGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVK-PSSPSDLESLMDPQAYT 492
            L+Y+  HEW+   E  VAT+GIT++A + LG+VV+ +LPE G +V  G   G +ES K+ SD+ SP++GEV   N  + + P LVNS+P+E GWL KV+    P+DL S  +  A++
Sbjct:    7 LRYSKEHEWLSALEDGVATIGITEYAANALGDVVYAQLPEVGDTVTAGETCGELESTKSVSDLYSPVTGEVTAANQDVVDDPSLVNSAPFEGGWLFKVRVAEEPADLLSADEYTAFS 123          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_MYCSS (Glycine cleavage system H protein OS=Mycobacterium sp. (strain MCS) GN=gcvH PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.074e-21
Identity = 55/119 (46.22%), Postives = 74/119 (62.18%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLES----LMDPQAY 489
            L Y   HEWV   G     VGITD+AQ  LG+VVFV+LP+ GA +  G  FG VES K+ SD+ +P+S +V+ VN  L  +P LVNS PY EGWL+ ++  +  D+E+    L+D   Y
Sbjct:    8 LYYTDEHEWVLRTGDDTLRVGITDYAQAALGDVVFVQLPDVGAELTSGESFGEVESTKSVSDLYAPVSAKVLAVNGNLEASPDLVNSDPYGEGWLVDLQLDA-DDMEAALGGLLDADGY 125          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_MYCSK (Glycine cleavage system H protein OS=Mycobacterium sp. (strain KMS) GN=gcvH PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.074e-21
Identity = 55/119 (46.22%), Postives = 74/119 (62.18%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLES----LMDPQAY 489
            L Y   HEWV   G     VGITD+AQ  LG+VVFV+LP+ GA +  G  FG VES K+ SD+ +P+S +V+ VN  L  +P LVNS PY EGWL+ ++  +  D+E+    L+D   Y
Sbjct:    8 LYYTDEHEWVLRTGDDTLRVGITDYAQAALGDVVFVQLPDVGAELTSGESFGEVESTKSVSDLYAPVSAKVLAVNGNLEASPDLVNSDPYGEGWLVDLQLDA-DDMEAALGGLLDADGY 125          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_MYCSJ (Glycine cleavage system H protein OS=Mycobacterium sp. (strain JLS) GN=gcvH PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.074e-21
Identity = 55/119 (46.22%), Postives = 74/119 (62.18%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLES----LMDPQAY 489
            L Y   HEWV   G     VGITD+AQ  LG+VVFV+LP+ GA +  G  FG VES K+ SD+ +P+S +V+ VN  L  +P LVNS PY EGWL+ ++  +  D+E+    L+D   Y
Sbjct:    8 LYYTDEHEWVLRTGDDTLRVGITDYAQAALGDVVFVQLPDVGAELTSGESFGEVESTKSVSDLYAPVSAKVLAVNGNLEASPDLVNSDPYGEGWLVDLQLDA-DDMEAALGGLLDADGY 125          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_CLAM3 (Glycine cleavage system H protein OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=gcvH PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.074e-21
Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVK 441
            L+Y + HEWV+ +G VATVGIT +A D LG+VVFVELP  G  +  G   G +ES K+  ++ +PI G V EVN  +  +P LVNS P+  GWL+KV+
Sbjct:    7 LQYTAEHEWVQVDGDVATVGITAYAADKLGDVVFVELPAVGDELAGGEVVGEIESTKSVGELFAPIDGTVTEVNDDVVASPDLVNSDPFGAGWLVKVR 104          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_PROMP (Glycine cleavage system H protein OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gcvH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.402e-21
Identity = 48/114 (42.11%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 489
            L+YA +HE+VK E  +  +G+++ A D LG++VFVEL E G ++++G  FG +ESVKA  +V  P SGEVI VN  + + P ++ + P  +GWL+ +K  S   L+ LM+   Y
Sbjct:    9 LRYADTHEYVKEENGLFKIGVSEFAIDQLGDIVFVELVEKGTNLQKGETFGTIESVKAVEEVYLPFSGEVISVNEGVIDNPEILQNDPIGDGWLLIIKSESNVLLDELMNSDEY 122          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_CLOPH (Glycine cleavage system H protein OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=gcvH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.402e-21
Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = 1
Query:  136 VLDGLKYASSHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            VL+ L Y  +HEWV+ E  + A VG+TD+AQ  LG++VFV LP+ G     G  F  VESVKA SDV  P++G V E+N +L + P  +N +PY E W  K+  +  ++ E  + P+ Y +F ++E
Sbjct:    3 VLENLVYTKTHEWVRFEDETTALVGLTDYAQQTLGQLVFVNLPQEGDETVTGESFADVESVKAVSDVYCPVTGVVSEINEELLDAPEKINDTPY-EAWFAKI--TDITEKEEFLSPEEYEEFVKKE 125          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_PICTO (Probable glycine cleavage system H protein OS=Picrophilus torridus GN=gcvH PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.832e-21
Identity = 54/126 (42.86%), Postives = 75/126 (59.52%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 507
            S V D L Y  SHEW   E  VATVGITD+AQ  L ++V+V+ P+ G    +G     +ESVK+  DV SP++GE+IE+N  L   P L+N  PY + WL+K++ S  +D    M  + Y K+  E
Sbjct:    2 SRVPDNLYYTKSHEWFLIENGVATVGITDYAQHQLTDIVYVDFPKNGEHKNKGETLLTIESVKSAEDVYSPVTGEIIEINRDLESKPELINEDPY-KNWLVKIRLS--NDNFDGMSGEEYKKYIGE 124          
The following BLAST results are available for this feature:
BLAST of CX299943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_CHLPB6.295e-2245.83Glycine cleavage system H protein OS=Chlorobium ph... [more]
GCSH_CLAMS8.222e-2250.00Glycine cleavage system H protein OS=Clavibacter m... [more]
GCSH_STRGG1.074e-2144.44Glycine cleavage system H protein OS=Streptomyces ... [more]
GCSH_MYCSS1.074e-2146.22Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_MYCSK1.074e-2146.22Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_MYCSJ1.074e-2146.22Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_CLAM31.074e-2150.00Glycine cleavage system H protein OS=Clavibacter m... [more]
GCSH_PROMP1.402e-2142.11Glycine cleavage system H protein OS=Prochlorococc... [more]
GCSH_CLOPH1.402e-2142.06Glycine cleavage system H protein OS=Clostridium p... [more]
GCSH_PICTO1.832e-2142.86Probable glycine cleavage system H protein OS=Picr... [more]

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Properties
Property NameValue
Genbank descriptionC07004C07SK SaltLeaf1 Citrus clementina cDNA clone C07004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299943 ID=CX299943; Name=CX299943; organism=Citrus clementina; type=EST; length=610bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGTTGGCATCACTGATCATGCCCAGGATCATCTTGGAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCAGTCAAACAAGGCGGCGGCTTCGGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAACACCAAGCTCACTGAAACGCCTGGCTTGGTCA
ATTCAAGCCCATATGAAGAAGGATGGCTGATAAAGGTGAAGCCTAGCAGC
CCTTCGGATTTAGAATCCTTGATGGATCCACAGGCTTACACGAAATTTTG
CGAAGAAGAAAATGCAGCTCATTAGAATCTTCACATTGTTTCATTTTCTT
TTCCCAAAACATACTAATAAATCTCTTTGTTTTACTCGCTAAAAAAAAAA
AAAAAAAAAA
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