CX299943

Overview
NameCX299943
Unique NameCX299943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH2_SULAC (Probable glycine cleavage system H protein 2 OS=Sulfolobus acidocaldarius GN=gcvH2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15
Identity = 40/105 (38.10%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  172 WVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQ 483
            WVK EGS +A VGITD AQ   G++V + + + G  V++G     +ES K    V +P+SGEV++ N+++ ++P ++N  PY +GW+ K+K S+  +++ L+  Q
Sbjct:   24 WVKIEGSDIAVVGITDLAQTMAGKIVKIRIKKKGIKVERGRPVATLESGKWAGPVPAPVSGEVVDSNSEVEKSPVILNRDPYGQGWIAKIKISNQEEVKQLLTGQ 128          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH5_AQUAE (Glycine cleavage system H protein 5 OS=Aquifex aeolicus GN=gcvH5 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.346e-15
Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  172 WVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLM 474
            W K E  V T+G+T  A    G +V     + G +VK+      +ES K    V SP  GE++EVN  L   P LVN  PY +GW+ KVKP++P + +S++
Sbjct:   26 WAKEEDGVFTIGLTSVAAAMAGRLVAYTPKKVGKAVKKDKSVATIESGKWVGPVPSPFDGEIVEVNEALKGNPALVNDDPYGQGWIAKVKPANPEEAKSVL 126          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_CHLMU (Glycine cleavage system H protein OS=Chlamydia muridarum GN=gcvH PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 44/117 (37.61%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  139 LDGLKYASS-HEWVKH-EGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESL-MDP 480
            + G KY S  H W++     +  +G++   Q+HLG ++ ++LP  GAS+K+G    V+ES K+  +V SP+SGEVIEVN  L +    +N S   EGW + ++ S   D E   +DP
Sbjct:    1 MKGKKYYSDYHVWIEPIHSQIVRLGLSSRMQEHLGNILHIDLPSLGASIKEGEELCVLESSKSAIEVLSPVSGEVIEVNIALEDDTHPINHSAESEGWFVVLQLSEDFDGERFSLDP 117          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH3_AQUAE (Glycine cleavage system H protein 3 OS=Aquifex aeolicus GN=gcvH3 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.661e-14
Identity = 38/118 (32.20%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  172 WVK-HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 522
            WV+ +E    T+G+TD  Q   G ++ + +   G  VK+G     +ES K    V + + GE++EVN K+ E P  +N  PY + W++K+KP+S   L+  +   A+ +   EE   H
Sbjct:   32 WVRVNEDGTVTLGLTDVGQTRAGRLLHIRVKPVGTKVKKGKPVATLESGKWAGPVPALVEGEIVEVNPKVVEDPNYINIDPYGDAWIVKIKPTSEETLKRDLSELAHGEKAHEEMKKH 149          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_CHLPN (Glycine cleavage system H protein OS=Chlamydia pneumoniae GN=gcvH PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.169e-14
Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 1
Query:  154 YASSHEWVK--HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPS---SPSDLESLMDPQ 483
            Y+  H W+   HE  V  +G+T+  Q +LG ++ V+LP  G+  K+G    ++ES K+  +V SP+SGEVI++N  L + P  +N +P  EGWL  V+      PS+L SLMD +
Sbjct:    3 YSDYHVWILPVHE-RVVRLGLTEKMQKNLGAILHVDLPSVGSLCKEGEVLVILESSKSAIEVLSPVSGEVIDINLDLVDNPQKINEAPEGEGWLAVVRLDQDWDPSNL-SLMDEE 115          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH2_AQUAE (Glycine cleavage system H protein 2 OS=Aquifex aeolicus GN=gcvH2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  172 WVK-HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSS-PSDLESLM 474
            W K +E    TVG+TD  Q   G+++ + +   G  VK+G     +ES K    V + I GEV+E N KL + P L+N  PY EGW+ K+KP++   DL+ L+
Sbjct:   26 WFKVNEDGTVTVGVTDIGQARAGKIINIRIKPPGKYVKKGKPVASLESGKWAGPVPADIEGEVVERNEKLFDKPDLINEDPYGEGWIAKLKPANLERDLQDLV 128          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_CHLTR (Glycine cleavage system H protein OS=Chlamydia trachomatis GN=gcvH PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.976e-13
Identity = 37/100 (37.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  139 LDGLKYASS-HEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLI 432
            + G KY S  H W++   S +  +G++   ++HLG ++ ++LP  GA +K+G    ++ES K+  +V SP+SGEV+EVNT L +    VN++   EGW +
Sbjct:    1 MKGKKYYSDYHVWIEPIHSRIVKLGLSSQMREHLGNILHIDLPSLGAFIKEGEKLCILESSKSAIEVLSPVSGEVLEVNTALEDDILPVNNATESEGWFV 100          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_CHLTA (Glycine cleavage system H protein OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=gcvH PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.976e-13
Identity = 37/100 (37.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  139 LDGLKYASS-HEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLI 432
            + G KY S  H W++   S +  +G++   ++HLG ++ ++LP  GA +K+G    ++ES K+  +V SP+SGEV+EVNT L +    VN++   EGW +
Sbjct:    1 MKGKKYYSDYHVWIEPIHSRIVKLGLSSQMREHLGNILHIDLPSLGAFIKEGEKLCILESSKSAIEVLSPVSGEVLEVNTALEDDILPVNNATESEGWFV 100          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_CHLTB (Glycine cleavage system H protein OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=gcvH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.190e-12
Identity = 36/100 (36.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  139 LDGLKYASS-HEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLI 432
            + G KY S  H W++   S +  +G++   ++HLG ++ ++LP  G+ +K+G    ++ES K+  +V SP+SGEV+EVNT L +    VN++   EGW +
Sbjct:    1 MKGQKYYSDYHVWIEPIHSRIVKLGLSSQMREHLGNILHIDLPSVGSFIKEGEELCILESSKSAIEVLSPVSGEVLEVNTALEDDILPVNNATESEGWFV 100          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_CHLT2 (Glycine cleavage system H protein OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=gcvH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.190e-12
Identity = 36/100 (36.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  139 LDGLKYASS-HEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLI 432
            + G KY S  H W++   S +  +G++   ++HLG ++ ++LP  G+ +K+G    ++ES K+  +V SP+SGEV+EVNT L +    VN++   EGW +
Sbjct:    1 MKGQKYYSDYHVWIEPIHSRIVKLGLSSQMREHLGNILHIDLPSVGSFIKEGEELCILESSKSAIEVLSPVSGEVLEVNTALEDDILPVNNATESEGWFV 100          
The following BLAST results are available for this feature:
BLAST of CX299943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH2_SULAC1.150e-1538.10Probable glycine cleavage system H protein 2 OS=Su... [more]
GCSH5_AQUAE3.346e-1538.61Glycine cleavage system H protein 5 OS=Aquifex aeo... [more]
GCSH_CHLMU4.370e-1537.61Glycine cleavage system H protein OS=Chlamydia mur... [more]
GCSH3_AQUAE1.661e-1432.20Glycine cleavage system H protein 3 OS=Aquifex aeo... [more]
GCSH_CHLPN2.169e-1439.13Glycine cleavage system H protein OS=Chlamydia pne... [more]
GCSH2_AQUAE2.398e-1338.83Glycine cleavage system H protein 2 OS=Aquifex aeo... [more]
GCSH_CHLTR6.976e-1337.00Glycine cleavage system H protein OS=Chlamydia tra... [more]
GCSH_CHLTA6.976e-1337.00Glycine cleavage system H protein OS=Chlamydia tra... [more]
GCSH_CHLTB1.190e-1236.00Glycine cleavage system H protein OS=Chlamydia tra... [more]
GCSH_CHLT21.190e-1236.00Glycine cleavage system H protein OS=Chlamydia tra... [more]

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Properties
Property NameValue
Genbank descriptionC07004C07SK SaltLeaf1 Citrus clementina cDNA clone C07004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299943 ID=CX299943; Name=CX299943; organism=Citrus clementina; type=EST; length=610bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGTTGGCATCACTGATCATGCCCAGGATCATCTTGGAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCAGTCAAACAAGGCGGCGGCTTCGGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAACACCAAGCTCACTGAAACGCCTGGCTTGGTCA
ATTCAAGCCCATATGAAGAAGGATGGCTGATAAAGGTGAAGCCTAGCAGC
CCTTCGGATTTAGAATCCTTGATGGATCCACAGGCTTACACGAAATTTTG
CGAAGAAGAAAATGCAGCTCATTAGAATCTTCACATTGTTTCATTTTCTT
TTCCCAAAACATACTAATAAATCTCTTTGTTTTACTCGCTAAAAAAAAAA
AAAAAAAAAA
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