CX299948

Overview
NameCX299948
Unique NameCX299948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length249
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10362 contig Ccv1_Contig10362:1152..1400. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_PINTH (50S ribosomal protein L2, chloroplastic OS=Pinus thunbergii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.701e-31
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVA+LIAKE +SATL+LPSGEVRLIS+NCSAT+GQVGN+ AN +S G+AG+K WLGKR  VRGV
Sbjct:  143 HNIEITLGKGGQLARAAGAVAELIAKEDRSATLRLPSGEVRLISENCSATIGQVGNITANNRSFGKAGAKRWLGKRSEVRGV 224          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_PINKO (50S ribosomal protein L2, chloroplastic OS=Pinus koraiensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.701e-31
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVA+LIAKE +SATL+LPSGEVRLIS+NCSAT+GQVGN+ AN +S G+AG+K WLGKR  VRGV
Sbjct:  143 HNIEITLGKGGQLARAAGAVAELIAKEDRSATLRLPSGEVRLISENCSATIGQVGNITANNRSFGKAGAKRWLGKRSEVRGV 224          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_PICAB (50S ribosomal protein L2, chloroplastic OS=Picea abies GN=rpl2 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.701e-31
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVA+LIAKE +SATL+LPSGEVRLIS+NCSAT+GQVGN+ AN +S G+AG+K WLGKR  VRGV
Sbjct:  142 HNIEITLGKGGQLARAAGAVAELIAKEDRSATLRLPSGEVRLISENCSATIGQVGNITANNRSFGKAGAKRWLGKRSEVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_ANTFO (50S ribosomal protein L2, chloroplastic OS=Anthoceros formosae GN=rpl2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.208e-30
Identity = 63/82 (76.83%), Postives = 73/82 (89.02%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HN+EIT GKGGQLARAAGAVAK+IAKEG+ ATL+LPSGEVRLIS+ C AT+GQVGN  AN +++G+AGSK WLGKRP VRGV
Sbjct:  142 HNVEITPGKGGQLARAAGAVAKIIAKEGRLATLRLPSGEVRLISQKCLATIGQVGNSDANNRTIGKAGSKRWLGKRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_ANGEV (50S ribosomal protein L2, chloroplastic OS=Angiopteris evecta GN=rpl2 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.219e-29
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HN+EIT GKGGQLARAAGAVAKLIAKEG+ ATL+ PSGEVRLIS++C ATVGQ+GN   N K+ G+AGSK WLGKRP VRGV
Sbjct:  142 HNVEITPGKGGQLARAAGAVAKLIAKEGRLATLRSPSGEVRLISQDCLATVGQIGNADINNKNFGKAGSKRWLGKRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_HUPLU (50S ribosomal protein L2, chloroplastic OS=Huperzia lucidula GN=rpl2 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.592e-29
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HN+EIT G+GGQLARAAG  AKLIAKEG+ AT +LPSGEVRLIS+NC ATVGQVGNV  N ++LG+AGSK WLGKRP VRGV
Sbjct:  143 HNVEITPGRGGQLARAAGTAAKLIAKEGRLATSRLPSGEVRLISQNCLATVGQVGNVDDNNRTLGKAGSKRWLGKRPKVRGV 224          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_PSINU (50S ribosomal protein L2, chloroplastic OS=Psilotum nudum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.079e-29
Identity = 61/82 (74.39%), Postives = 72/82 (87.80%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+T GKGGQL RAAG VAK++AKE K AT++LPSGE RLISKNC AT+GQVGN+ AN+ +LG+AGSK WLGKRP+VRGV
Sbjct:  142 HNIELTPGKGGQLVRAAGTVAKIMAKEEKWATIRLPSGEFRLISKNCLATIGQVGNIDANKITLGKAGSKRWLGKRPIVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_ZYGCR (50S ribosomal protein L2, chloroplastic OS=Zygnema circumcarinatum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.716e-29
Identity = 60/82 (73.17%), Postives = 72/82 (87.80%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+  GKGGQ+ARAAGA+AK+IAKEGK ATL+LPSGEVRL+ + C AT+GQVGNV AN +S+G+AGSK WLG+RP VRGV
Sbjct:  142 HNIELQPGKGGQVARAAGAIAKIIAKEGKFATLRLPSGEVRLVLQQCLATIGQVGNVDANNQSIGKAGSKRWLGRRPTVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_WHEAT (50S ribosomal protein L2, chloroplastic OS=Triticum aestivum GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.716e-29
Identity = 64/82 (78.05%), Postives = 70/82 (85.37%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HN E T G+GGQLARAAGAVAK  AKEGK ATL+LPSGE R++++N  ATVGQ G VG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  140 HNKENTRGRGGQLARAAGAVAKHKAKEGKMATLRLPSGEGRIVTQNSLATVGQEGKVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_PHYPA (50S ribosomal protein L2, chloroplastic OS=Physcomitrella patens GN=rpl2 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.547e-29
Identity = 61/82 (74.39%), Postives = 73/82 (89.02%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEIT GKGGQL ++AGAVAKLIAKEG+ ATL+LPSGEVRL+S+N  AT+GQ+GNV AN K++G+AG+K WLGKRP VRGV
Sbjct:  142 HNIEITPGKGGQLVKSAGAVAKLIAKEGQLATLRLPSGEVRLVSQNSLATIGQIGNVDANNKTIGKAGAKRWLGKRPRVRGV 223          
The following BLAST results are available for this feature:
BLAST of CX299948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_PINTH1.701e-3180.4950S ribosomal protein L2, chloroplastic OS=Pinus t... [more]
RK2_PINKO1.701e-3180.4950S ribosomal protein L2, chloroplastic OS=Pinus k... [more]
RK2_PICAB1.701e-3180.4950S ribosomal protein L2, chloroplastic OS=Picea a... [more]
RK2_ANTFO3.208e-3076.8350S ribosomal protein L2, chloroplastic OS=Anthoce... [more]
RK2_ANGEV1.219e-2976.8350S ribosomal protein L2, chloroplastic OS=Angiopt... [more]
RK2_HUPLU1.592e-2976.8350S ribosomal protein L2, chloroplastic OS=Huperzi... [more]
RK2_PSINU2.079e-2974.3950S ribosomal protein L2, chloroplastic OS=Psilotu... [more]
RK2_ZYGCR2.716e-2973.1750S ribosomal protein L2, chloroplastic OS=Zygnema... [more]
RK2_WHEAT2.716e-2978.0550S ribosomal protein L2, chloroplastic OS=Triticu... [more]
RK2_PHYPA3.547e-2974.3950S ribosomal protein L2, chloroplastic OS=Physcom... [more]

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Properties
Property NameValue
Genbank descriptionC07004D01SK SaltLeaf1 Citrus clementina cDNA clone C07004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299948 ID=CX299948; Name=CX299948; organism=Citrus clementina; type=EST; length=249bp
ACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAG
CGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTA
AAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAAC
AGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAG
CCGGATCTAAATGTTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
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