CX299948

Overview
NameCX299948
Unique NameCX299948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length249
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_CRYJA (50S ribosomal protein L2, chloroplastic OS=Cryptomeria japonica GN=rpl2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.760e-28
Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HN+E+ +GKGGQLARAAGAVA+LIAKEG+  TL+LPSGEVRLIS+NC AT+GQVGNV    ++L +AGSK WLGKRP VRGV
Sbjct:  144 HNVEVQVGKGGQLARAAGAVAELIAKEGRLTTLRLPSGEVRLISENCLATIGQVGNVKWKNRTLSKAGSKRWLGKRPEVRGV 225          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_MARPO (50S ribosomal protein L2, chloroplastic OS=Marchantia polymorpha GN=rpl2 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.922e-28
Identity = 59/82 (71.95%), Postives = 68/82 (82.93%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEIT GKGGQL RAAG VAK+IAKEG+  TL+LPSGE+RLIS+ C AT+GQ+GNV  N   +G+AGSK WLGKRP VRGV
Sbjct:  142 HNIEITPGKGGQLVRAAGTVAKIIAKEGQLVTLRLPSGEIRLISQKCLATIGQIGNVDVNNLRIGKAGSKRWLGKRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_STAPU (50S ribosomal protein L2, chloroplastic OS=Staurastrum punctulatum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.689e-28
Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HN+E+  GKGGQ+ARAAG VA+++AKEG  ATL++PSGE RL+S+ C ATVGQVGNV AN +SLG+AGSK WLGKRP VRGV
Sbjct:  142 HNVELQPGKGGQIARAAGTVAQIVAKEGLLATLRMPSGEFRLVSQKCLATVGQVGNVDANNESLGKAGSKRWLGKRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_MESVI (50S ribosomal protein L2, chloroplastic OS=Mesostigma viride GN=rpl2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.141e-27
Identity = 60/82 (73.17%), Postives = 70/82 (85.37%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE++ G+GGQLARAAGAVA+LIAKEGK  T++LPSGEVRLI K C AT+GQVGNV AN  ++G+AG   WLGKRPVVRGV
Sbjct:  141 HNIELSPGQGGQLARAAGAVAQLIAKEGKFVTVRLPSGEVRLILKECWATIGQVGNVDANNITIGKAGRTRWLGKRPVVRGV 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_CHAGL (50S ribosomal protein L2, chloroplastic OS=Chaetosphaeridium globosum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.490e-27
Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEI  GKGGQL R+AG VA+LIAKEG  AT++LPSGEVR I KNC AT+GQ+GNV +N +S G+AGSK WLGK+P VRGV
Sbjct:  142 HNIEIKPGKGGQLVRSAGTVAQLIAKEGLVATIRLPSGEVRTIGKNCLATIGQLGNVDSNNRSFGKAGSKRWLGKKPTVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_SPIMX (50S ribosomal protein L2, chloroplastic OS=Spirogyra maxima GN=rpl2 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.152e-26
Identity = 55/82 (67.07%), Postives = 68/82 (82.93%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+  GKGGQ+ RAAG VA++IAK G+ ATL+LPSGE+RL+ + C ATVGQVGN+ AN + LG+AG+K WLGKRP VRGV
Sbjct:  142 HNIELQPGKGGQIVRAAGTVAQIIAKAGQLATLRLPSGEIRLVPQACFATVGQVGNIDANNRKLGKAGAKRWLGKRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_HALOH (50S ribosomal protein L2 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.068e-25
Identity = 56/82 (68.29%), Postives = 66/82 (80.49%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+  GKGGQLARAAG +A+++AKEGK A +KLPSGEVRLIS  C AT+GQVGN+     S+G+AG K WLGKRP VRGV
Sbjct:  142 HNIELKPGKGGQLARAAGTMAQILAKEGKYAHIKLPSGEVRLISLECKATIGQVGNIDHENISIGKAGRKRWLGKRPHVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_CHLAT (50S ribosomal protein L2, chloroplastic OS=Chlorokybus atmophyticus GN=rpl2 PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.822e-25
Identity = 53/82 (64.63%), Postives = 68/82 (82.93%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE++ G+GG+L RAAG VA+L+AKEG   T++LPSGEVRL+ K CSAT+GQVGNV A+  ++G+AG K WLG+RP VRGV
Sbjct:  142 HNIEVSPGQGGKLVRAAGGVAQLVAKEGSYVTVRLPSGEVRLVLKECSATIGQVGNVDASNVTIGKAGRKRWLGQRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_EMIHU (50S ribosomal protein L2, chloroplastic OS=Emiliania huxleyi GN=rpl2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.058e-25
Identity = 55/82 (67.07%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+TLGKGGQ+AR+AG  A++IAKEG   TLKLPS EVRL+ K C AT+GQVGN+ A    LG+AG   WLGKRP VRGV
Sbjct:  142 HNIELTLGKGGQIARSAGTYAQIIAKEGDFVTLKLPSNEVRLVYKECYATLGQVGNIDAINTCLGKAGRSRWLGKRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_ANEMR (50S ribosomal protein L2, plastid OS=Aneura mirabilis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.300e-25
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE   G+GGQL RAAG  AK++AKEG+  TLKLPSGE+R + + C AT+GQ+GN+ AN   LG+AGS+ WLGKRP VRGV
Sbjct:  149 HNIETRPGRGGQLVRAAGTTAKILAKEGQLVTLKLPSGEIRSLPQKCFATIGQIGNIDANNLKLGKAGSRRWLGKRPSVRGV 230          
The following BLAST results are available for this feature:
BLAST of CX299948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_CRYJA1.760e-2873.1750S ribosomal protein L2, chloroplastic OS=Cryptom... [more]
RK2_MARPO3.922e-2871.9550S ribosomal protein L2, chloroplastic OS=Marchan... [more]
RK2_STAPU6.689e-2870.7350S ribosomal protein L2, chloroplastic OS=Stauras... [more]
RK2_MESVI1.141e-2773.1750S ribosomal protein L2, chloroplastic OS=Mesosti... [more]
RK2_CHAGL1.490e-2770.7350S ribosomal protein L2, chloroplastic OS=Chaetos... [more]
RK2_SPIMX2.152e-2667.0750S ribosomal protein L2, chloroplastic OS=Spirogy... [more]
RL2_HALOH1.068e-2568.2950S ribosomal protein L2 OS=Halothermothrix orenii... [more]
RK2_CHLAT1.822e-2564.6350S ribosomal protein L2, chloroplastic OS=Chlorok... [more]
RK2_EMIHU4.058e-2567.0750S ribosomal protein L2, chloroplastic OS=Emilian... [more]
RK2_ANEMR5.300e-2563.4150S ribosomal protein L2, plastid OS=Aneura mirabi... [more]

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Properties
Property NameValue
Genbank descriptionC07004D01SK SaltLeaf1 Citrus clementina cDNA clone C07004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299948 ID=CX299948; Name=CX299948; organism=Citrus clementina; type=EST; length=249bp
ACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAG
CGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTA
AAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAAC
AGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAG
CCGGATCTAAATGTTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
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