CX299948
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_CRYJA (50S ribosomal protein L2, chloroplastic OS=Cryptomeria japonica GN=rpl2 PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.760e-28 Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 2 Query: 2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247 HN+E+ +GKGGQLARAAGAVA+LIAKEG+ TL+LPSGEVRLIS+NC AT+GQVGNV ++L +AGSK WLGKRP VRGV Sbjct: 144 HNVEVQVGKGGQLARAAGAVAELIAKEGRLTTLRLPSGEVRLISENCLATIGQVGNVKWKNRTLSKAGSKRWLGKRPEVRGV 225
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_MARPO (50S ribosomal protein L2, chloroplastic OS=Marchantia polymorpha GN=rpl2 PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 3.922e-28 Identity = 59/82 (71.95%), Postives = 68/82 (82.93%), Query Frame = 2 Query: 2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247 HNIEIT GKGGQL RAAG VAK+IAKEG+ TL+LPSGE+RLIS+ C AT+GQ+GNV N +G+AGSK WLGKRP VRGV Sbjct: 142 HNIEITPGKGGQLVRAAGTVAKIIAKEGQLVTLRLPSGEIRLISQKCLATIGQIGNVDVNNLRIGKAGSKRWLGKRPKVRGV 223
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_STAPU (50S ribosomal protein L2, chloroplastic OS=Staurastrum punctulatum GN=rpl2 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 6.689e-28 Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = 2 Query: 2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247 HN+E+ GKGGQ+ARAAG VA+++AKEG ATL++PSGE RL+S+ C ATVGQVGNV AN +SLG+AGSK WLGKRP VRGV Sbjct: 142 HNVELQPGKGGQIARAAGTVAQIVAKEGLLATLRMPSGEFRLVSQKCLATVGQVGNVDANNESLGKAGSKRWLGKRPKVRGV 223
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_MESVI (50S ribosomal protein L2, chloroplastic OS=Mesostigma viride GN=rpl2 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.141e-27 Identity = 60/82 (73.17%), Postives = 70/82 (85.37%), Query Frame = 2 Query: 2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247 HNIE++ G+GGQLARAAGAVA+LIAKEGK T++LPSGEVRLI K C AT+GQVGNV AN ++G+AG WLGKRPVVRGV Sbjct: 141 HNIELSPGQGGQLARAAGAVAQLIAKEGKFVTVRLPSGEVRLILKECWATIGQVGNVDANNITIGKAGRTRWLGKRPVVRGV 222
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_CHAGL (50S ribosomal protein L2, chloroplastic OS=Chaetosphaeridium globosum GN=rpl2 PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 1.490e-27 Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 2 Query: 2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247 HNIEI GKGGQL R+AG VA+LIAKEG AT++LPSGEVR I KNC AT+GQ+GNV +N +S G+AGSK WLGK+P VRGV Sbjct: 142 HNIEIKPGKGGQLVRSAGTVAQLIAKEGLVATIRLPSGEVRTIGKNCLATIGQLGNVDSNNRSFGKAGSKRWLGKKPTVRGV 223
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_SPIMX (50S ribosomal protein L2, chloroplastic OS=Spirogyra maxima GN=rpl2 PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 2.152e-26 Identity = 55/82 (67.07%), Postives = 68/82 (82.93%), Query Frame = 2 Query: 2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247 HNIE+ GKGGQ+ RAAG VA++IAK G+ ATL+LPSGE+RL+ + C ATVGQVGN+ AN + LG+AG+K WLGKRP VRGV Sbjct: 142 HNIELQPGKGGQIVRAAGTVAQIIAKAGQLATLRLPSGEIRLVPQACFATVGQVGNIDANNRKLGKAGAKRWLGKRPKVRGV 223
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_HALOH (50S ribosomal protein L2 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplB PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.068e-25 Identity = 56/82 (68.29%), Postives = 66/82 (80.49%), Query Frame = 2 Query: 2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247 HNIE+ GKGGQLARAAG +A+++AKEGK A +KLPSGEVRLIS C AT+GQVGN+ S+G+AG K WLGKRP VRGV Sbjct: 142 HNIELKPGKGGQLARAAGTMAQILAKEGKYAHIKLPSGEVRLISLECKATIGQVGNIDHENISIGKAGRKRWLGKRPHVRGV 223
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_CHLAT (50S ribosomal protein L2, chloroplastic OS=Chlorokybus atmophyticus GN=rpl2 PE=3 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 1.822e-25 Identity = 53/82 (64.63%), Postives = 68/82 (82.93%), Query Frame = 2 Query: 2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247 HNIE++ G+GG+L RAAG VA+L+AKEG T++LPSGEVRL+ K CSAT+GQVGNV A+ ++G+AG K WLG+RP VRGV Sbjct: 142 HNIEVSPGQGGKLVRAAGGVAQLVAKEGSYVTVRLPSGEVRLVLKECSATIGQVGNVDASNVTIGKAGRKRWLGQRPKVRGV 223
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_EMIHU (50S ribosomal protein L2, chloroplastic OS=Emiliania huxleyi GN=rpl2 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 4.058e-25 Identity = 55/82 (67.07%), Postives = 64/82 (78.05%), Query Frame = 2 Query: 2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247 HNIE+TLGKGGQ+AR+AG A++IAKEG TLKLPS EVRL+ K C AT+GQVGN+ A LG+AG WLGKRP VRGV Sbjct: 142 HNIELTLGKGGQIARSAGTYAQIIAKEGDFVTLKLPSNEVRLVYKECYATLGQVGNIDAINTCLGKAGRSRWLGKRPKVRGV 223
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_ANEMR (50S ribosomal protein L2, plastid OS=Aneura mirabilis GN=rpl2 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 5.300e-25 Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 2 Query: 2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247 HNIE G+GGQL RAAG AK++AKEG+ TLKLPSGE+R + + C AT+GQ+GN+ AN LG+AGS+ WLGKRP VRGV Sbjct: 149 HNIETRPGRGGQLVRAAGTTAKILAKEGQLVTLKLPSGEIRSLPQKCFATIGQIGNIDANNLKLGKAGSRRWLGKRPSVRGV 230 The following BLAST results are available for this feature:
BLAST of CX299948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299948 ID=CX299948; Name=CX299948; organism=Citrus clementina; type=EST; length=249bpback to top |