CX299948

Overview
NameCX299948
Unique NameCX299948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length249
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10362 contig Ccv1_Contig10362:1152..1400. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_PSEAK (50S ribosomal protein L2, chloroplastic OS=Pseudendoclonium akinetum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.923e-25
Identity = 52/82 (63.41%), Postives = 67/82 (81.71%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HN+E+  G GGQL+RAAG+ A+++AKEG+  TL+LPSGEVRL+S+NC AT+GQVGNV AN   +G+AG   WLG+RP VRGV
Sbjct:  142 HNVELYSGMGGQLSRAAGSSAQIVAKEGRFVTLRLPSGEVRLVSQNCWATIGQVGNVDANNIRIGKAGRMRWLGRRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_OLTVI (50S ribosomal protein L2, chloroplastic OS=Oltmannsiellopsis viridis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.041e-25
Identity = 55/82 (67.07%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HN+E+  G GGQLARAAGAVA+++AKEG   TL+LPSGEVRL+S  C ATVGQVGN  A    +G+AG K WLGKRP VRGV
Sbjct:  142 HNVELQPGAGGQLARAAGAVAQIVAKEGNLVTLRLPSGEVRLVSNECWATVGQVGNTDAINMVVGKAGRKRWLGKRPHVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_LEPTE (50S ribosomal protein L2, chloroplastic OS=Leptosira terrestris GN=rpl2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.041e-25
Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+  G GGQLARAAG+VA+L+AKEG   TL+LPSGE+RL+SK+C AT+GQVGNV     ++G+AG   WLG+RP VRGV
Sbjct:  142 HNIELKPGSGGQLARAAGSVAQLVAKEGNFVTLRLPSGEIRLVSKSCWATIGQVGNVEQMNLTVGKAGKSRWLGRRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_GLOVI (50S ribosomal protein L2 OS=Gloeobacter violaceus GN=rplB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.542e-24
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+  G+GGQ+ARAAGAVA+L+AKEG  ATL+LPSGEVR++ K C AT+GQVGN+ A   S+G+AG + WLGKRP  RGV
Sbjct:  142 HNIELLPGRGGQMARAAGAVAQLMAKEGDYATLRLPSGEVRVVRKECYATLGQVGNLDAKNISIGKAGRQRWLGKRPHNRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_THEEB (50S ribosomal protein L2 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.014e-24
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+EIT G+G Q+ RAAGA+A+++AKEG   TLKLPSGEVRL  K C AT+GQVGNV AN  SLG+AG   W G+RP VRG
Sbjct:  143 HNVEITPGRGAQMVRAAGAMAQVVAKEGDMVTLKLPSGEVRLFRKECYATIGQVGNVEANNISLGKAGRNRWKGRRPKVRG 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_CYAP4 (50S ribosomal protein L2 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.014e-24
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+EIT G+GGQ+ RAAGA+A+++AKEG   TLKLPSGEVRL  K C AT+GQ+GNV  N  S+G+AG   W G+RP VRG
Sbjct:  142 HNVEITPGRGGQMVRAAGAMAQVVAKEGDMVTLKLPSGEVRLFRKECYATIGQIGNVDVNNISIGKAGRNRWKGRRPKVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_ACAM1 (50S ribosomal protein L2 OS=Acaryochloris marina (strain MBIC 11017) GN=rplB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.014e-24
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQLARAAGA+A+++AKEGK  TLKLPSGEVRL  K C AT+GQVGNV +N  ++G+AG   W  +RP VRG
Sbjct:  142 HNVELIPGKGGQLARAAGALAQVVAKEGKMVTLKLPSGEVRLFQKECYATIGQVGNVESNNITIGKAGRNRWKARRPKVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_CHAVU (50S ribosomal protein L2, chloroplastic OS=Chara vulgaris GN=rpl2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.014e-24
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HNIE+  GKGGQL RAAG VA+++AKEGK  +++LPSGEVRLI + C AT+GQVGN   N +S+G+AGSK W GKRP VRG
Sbjct:  142 HNIELQPGKGGQLVRAAGTVAQVVAKEGKWTSIRLPSGEVRLIYQKCLATIGQVGNPEFNNQSIGKAGSKRWQGKRPKVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_GEOSL (50S ribosomal protein L2 OS=Geobacter sulfurreducens GN=rplB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.487e-24
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+ +GKGGQLAR+AG  A+L+AKEGK A +KLPSGEVR++  +C AT+GQVGN+     S+G+AG   WLG+RP VRGV
Sbjct:  142 HNIELKIGKGGQLARSAGTFAQLMAKEGKYAQVKLPSGEVRMVLLDCMATIGQVGNIDHENVSIGKAGRSRWLGRRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_OSTTA (50S ribosomal protein L2, chloroplastic OS=Ostreococcus tauri GN=rpl2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.860e-24
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HNIE+   KGGQL R+AGAVA+L+AKEG+  TL+LPSGEVRLIS  C AT+GQVGN+ A   SLG+AG   WLG+RP VRG
Sbjct:  142 HNIEMHPKKGGQLVRSAGAVAQLVAKEGEYVTLRLPSGEVRLISNKCWATIGQVGNMEAMNLSLGKAGRSRWLGRRPTVRG 222          
The following BLAST results are available for this feature:
BLAST of CX299948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_PSEAK6.923e-2563.4150S ribosomal protein L2, chloroplastic OS=Pseuden... [more]
RK2_OLTVI9.041e-2567.0750S ribosomal protein L2, chloroplastic OS=Oltmann... [more]
RK2_LEPTE9.041e-2564.6350S ribosomal protein L2, chloroplastic OS=Leptosi... [more]
RL2_GLOVI1.542e-2465.8550S ribosomal protein L2 OS=Gloeobacter violaceus ... [more]
RL2_THEEB2.014e-2465.4350S ribosomal protein L2 OS=Thermosynechococcus el... [more]
RL2_CYAP42.014e-2462.9650S ribosomal protein L2 OS=Cyanothece sp. (strain... [more]
RL2_ACAM12.014e-2464.2050S ribosomal protein L2 OS=Acaryochloris marina (... [more]
RK2_CHAVU2.014e-2465.4350S ribosomal protein L2, chloroplastic OS=Chara v... [more]
RL2_GEOSL4.487e-2462.2050S ribosomal protein L2 OS=Geobacter sulfurreduce... [more]
RK2_OSTTA5.860e-2466.6750S ribosomal protein L2, chloroplastic OS=Ostreoc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004D01SK SaltLeaf1 Citrus clementina cDNA clone C07004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299948 ID=CX299948; Name=CX299948; organism=Citrus clementina; type=EST; length=249bp
ACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAG
CGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTA
AAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAAC
AGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAG
CCGGATCTAAATGTTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
back to top