CX299948

Overview
NameCX299948
Unique NameCX299948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length249
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10362 contig Ccv1_Contig10362:1152..1400. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_ADICA (50S ribosomal protein L2, chloroplastic OS=Adiantum capillus-veneris GN=rpl2 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.860e-24
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HNIE+  G+G QL R+AG VAK+IAKEG+ ATL+LPSGE+RL+ ++C A+VG+VGNV  + K L +AGSK WLG+RP VRG
Sbjct:  139 HNIELKSGRGAQLVRSAGTVAKVIAKEGRLATLRLPSGEIRLVPRDCLASVGRVGNVDISNKGLKKAGSKRWLGRRPKVRG 219          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_GEOMG (50S ribosomal protein L2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.654e-24
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+ +GKGGQLAR+AG  A+L+AKEGK A +KLPSGEVR++  +C ATVGQVGN+     ++G+AG   WLG+RP VRGV
Sbjct:  142 HNIELKIGKGGQLARSAGTFAQLMAKEGKYAQVKLPSGEVRMVLLDCMATVGQVGNIDHENVTIGKAGRSRWLGRRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_PELPD (50S ribosomal protein L2 OS=Pelobacter propionicus (strain DSM 2379) GN=rplB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.996e-24
Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HN+E+ LGKG QLAR+AG  A+L+AKEG+ + +KLPSGEVR++ ++C AT+GQVGNV   + SLG+AG   WLGKRP VRGV
Sbjct:  142 HNVELKLGKGAQLARSAGTFAQLMAKEGRYSQVKLPSGEVRMVLQDCYATIGQVGNVDHEKVSLGKAGRARWLGKRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_CHLVU (50S ribosomal protein L2, chloroplastic OS=Chlorella vulgaris GN=rpl2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.306e-23
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HNIE+  G GGQL RAAG VA+++AKEG  A+L+LPSGEVRL+S+NC AT+G+VGN+ A   +LG+AG   WLG+RP VRG
Sbjct:  142 HNIELQPGSGGQLVRAAGTVAQIVAKEGTWASLRLPSGEVRLVSQNCWATIGRVGNIDAFNLTLGKAGRSRWLGRRPHVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_DESAA (50S ribosomal protein L2 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.705e-23
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+ +GKGGQ+ R AG  A+L+AKEGK A ++LPSGEVRL+   C AT+GQVGNV     +LG+AG K WLG+RP VRGV
Sbjct:  142 HNIELKVGKGGQVVRGAGTFAQLVAKEGKYAQVRLPSGEVRLVLLKCMATIGQVGNVEHENLALGKAGRKRWLGRRPSVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_NOSP7 (50S ribosomal protein L2 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.227e-23
Identity = 51/81 (62.96%), Postives = 62/81 (76.54%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+T GKGGQ+ RAAGA A+++AKEG   TLKLPSGEVRLI ++C AT+GQVGN  A   S G+AG   W G+RP VRG
Sbjct:  142 HNVEMTPGKGGQIVRAAGASAQVVAKEGDYVTLKLPSGEVRLIRRDCYATIGQVGNTDARNLSAGKAGRNRWKGRRPKVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_PELCD (50S ribosomal protein L2 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rplB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.908e-23
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+ +GKGGQLAR+AG  A + AKEGK A L+LPSGEVRL+ ++C ATVGQVGNV      +G+AG   WLGKRP  RGV
Sbjct:  142 HNIELKIGKGGQLARSAGTYAMIAAKEGKYAQLRLPSGEVRLVLQDCCATVGQVGNVQHENVKIGKAGRNRWLGKRPQSRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_CLOTH (50S ribosomal protein L2 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.908e-23
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+  GKGGQL R+AG VA+L+AKEG  A ++LPSGEVR++S  C AT+GQVGN+     S+G+AG K W+G RP VRGV
Sbjct:  142 HNIELKPGKGGQLVRSAGNVAQLMAKEGNYAQIRLPSGEVRMVSLKCKATIGQVGNIDHENVSIGKAGRKRWMGIRPTVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_CHLRE (50S ribosomal protein L2, chloroplastic OS=Chlamydomonas reinhardtii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.908e-23
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E   G GGQLAR+AGA+ +++AKEG   T++LPS E+RL+SKNC ATVGQVGN+ A   ++G+AG   WLGKRP VRG
Sbjct:  144 HNVEFQPGSGGQLARSAGAMVEILAKEGNFVTIRLPSKEIRLVSKNCWATVGQVGNIEAYNLTIGKAGRTRWLGKRPTVRG 224          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_GEOLS (50S ribosomal protein L2 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.799e-23
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+ +GKG QLAR+AG  A+L++KEGK + +KLPSGEVRL+ ++C AT+GQVGN+      LG+AG   WLGKRP VRGV
Sbjct:  142 HNIELKIGKGAQLARSAGTFAQLMSKEGKYSQVKLPSGEVRLVLQDCYATIGQVGNIDHENVCLGKAGRSRWLGKRPKVRGV 223          
The following BLAST results are available for this feature:
BLAST of CX299948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_ADICA5.860e-2462.9650S ribosomal protein L2, chloroplastic OS=Adiantu... [more]
RL2_GEOMG7.654e-2462.2050S ribosomal protein L2 OS=Geobacter metallireduc... [more]
RL2_PELPD9.996e-2462.2050S ribosomal protein L2 OS=Pelobacter propionicus... [more]
RK2_CHLVU1.306e-2362.9650S ribosomal protein L2, chloroplastic OS=Chlorel... [more]
RL2_DESAA1.705e-2362.2050S ribosomal protein L2 OS=Desulfatibacillum alke... [more]
RL2_NOSP72.227e-2362.9650S ribosomal protein L2 OS=Nostoc punctiforme (st... [more]
RL2_PELCD2.908e-2363.4150S ribosomal protein L2 OS=Pelobacter carbinolicu... [more]
RL2_CLOTH2.908e-2360.9850S ribosomal protein L2 OS=Clostridium thermocell... [more]
RK2_CHLRE2.908e-2360.4950S ribosomal protein L2, chloroplastic OS=Chlamyd... [more]
RL2_GEOLS3.799e-2360.9850S ribosomal protein L2 OS=Geobacter lovleyi (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004D01SK SaltLeaf1 Citrus clementina cDNA clone C07004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299948 ID=CX299948; Name=CX299948; organism=Citrus clementina; type=EST; length=249bp
ACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAG
CGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTA
AAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAAC
AGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAG
CCGGATCTAAATGTTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
back to top