CX299948

Overview
NameCX299948
Unique NameCX299948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length249
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_GEOUR (50S ribosomal protein L2 OS=Geobacter uraniireducens (strain Rf4) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.479e-23
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+ +GKG QLAR+AG  A+L+AKE K A +KLPSGEVR++  +C ATVGQVGN+     S+G+AG   WLGKRP VRGV
Sbjct:  142 HNIELKIGKGAQLARSAGTFAQLMAKEDKYAQVKLPSGEVRMVLLDCIATVGQVGNIDHENVSIGKAGRSRWLGKRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_ANAVT (50S ribosomal protein L2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.479e-23
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQ+ R+AGA A+++AKEG   TLKLPSGEVRLI + C AT+GQVGN  A   S G+AG   W G+RP VRG
Sbjct:  142 HNVELKAGKGGQIVRSAGATAQVVAKEGNYVTLKLPSGEVRLIRRECYATIGQVGNTDARNLSAGKAGRNRWKGRRPKVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_ANASP (50S ribosomal protein L2 OS=Anabaena sp. (strain PCC 7120) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.479e-23
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQ+ R+AGA A+++AKEG   TLKLPSGEVRLI + C AT+GQVGN  A   S G+AG   W G+RP VRG
Sbjct:  142 HNVELKAGKGGQIVRSAGATAQVVAKEGNYVTLKLPSGEVRLIRRECYATIGQVGNTDARNLSAGKAGRNRWKGRRPKVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_SYNFM (50S ribosomal protein L2 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.462e-23
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HN+E+  GKGGQLAR+AG+  +LIAKEG  A L+LPS E+R++  +C ATVGQVGN+     SLG+AG K WLGKRP VRGV
Sbjct:  142 HNVELKPGKGGQLARSAGSSIQLIAKEGTHAILRLPSSEMRMVPISCKATVGQVGNIDHENLSLGKAGRKRWLGKRPHVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_GEOSM (50S ribosomal protein L2 OS=Geobacter sp. (strain M21) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.462e-23
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+ +GKG QLAR+AG  A+L+AKEGK   +KLPSGEVR+I  +C AT+GQVGNV     S+G+AG   WLG RP VRGV
Sbjct:  142 HNIELKIGKGAQLARSAGTFAQLMAKEGKYGQVKLPSGEVRMILMDCKATIGQVGNVDHENVSIGKAGRSRWLGVRPHVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_ANATD (50S ribosomal protein L2 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.462e-23
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HNIE+  GKGGQL R+AG+VA+L+AKEGK A +KLPSGE+R +S+ C AT+GQVGN+      +G+AG K W+G RP VRG
Sbjct:  143 HNIELMPGKGGQLCRSAGSVAQLMAKEGKYALIKLPSGELRYVSQECRATIGQVGNLDHENVRIGKAGRKRWMGIRPTVRG 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_CYAPA (50S ribosomal protein L2, cyanelle OS=Cyanophora paradoxa GN=rpl2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.462e-23
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+T GKGGQL R+AG+ A+L+AKEG   TL+LPSGE+R + K C AT+GQ+GN   +  S+G+AG   WLG RP VRGV
Sbjct:  142 HNIELTPGKGGQLVRSAGSSAQLLAKEGNYVTLRLPSGEMRFVRKECYATIGQIGNAEISNISIGKAGRNRWLGIRPTVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_SYNJA (50S ribosomal protein L2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  G+GGQ+ RAAGA A+++AKEGK  +LKLPSGEVR+I   C AT+GQVGNV  +  SLG+AG   WLG+RP VRG
Sbjct:  148 HNVELYPGRGGQIVRAAGAGAQVVAKEGKYVSLKLPSGEVRMIRGECYATIGQVGNVDHSNLSLGKAGRSRWLGRRPHVRG 228          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_GEOSF (50S ribosomal protein L2 OS=Geobacter sp. (strain FRC-32) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+ +GKG QLAR+AG  A+L+AKE K A +KLPSGEVR++  +C AT+GQVGN+     S+G+AG   WLGKRP VRGV
Sbjct:  142 HNIELKIGKGAQLARSAGTFAQLMAKEEKYAQVKLPSGEVRMVLMDCMATIGQVGNLDHENVSIGKAGRSRWLGKRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_DESMR (50S ribosomal protein L2 OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+  G+GGQ+ RAAG  A+L+AKEGK A L+LPSGEVR +   C AT+GQVGNV     S+G+AG   WLGKRP VRGV
Sbjct:  142 HNIELNPGRGGQMCRAAGTYAQLVAKEGKYALLRLPSGEVRNVLSTCLATIGQVGNVMHENISIGKAGRNRWLGKRPEVRGV 223          
The following BLAST results are available for this feature:
BLAST of CX299948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_GEOUR6.479e-2362.2050S ribosomal protein L2 OS=Geobacter uraniireduce... [more]
RL2_ANAVT6.479e-2360.4950S ribosomal protein L2 OS=Anabaena variabilis (s... [more]
RL2_ANASP6.479e-2360.4950S ribosomal protein L2 OS=Anabaena sp. (strain P... [more]
RL2_SYNFM8.462e-2362.2050S ribosomal protein L2 OS=Syntrophobacter fumaro... [more]
RL2_GEOSM8.462e-2362.2050S ribosomal protein L2 OS=Geobacter sp. (strain ... [more]
RL2_ANATD8.462e-2360.4950S ribosomal protein L2 OS=Anaerocellum thermophi... [more]
RK2_CYAPA8.462e-2359.7650S ribosomal protein L2, cyanelle OS=Cyanophora p... [more]
RL2_SYNJA1.105e-2261.7350S ribosomal protein L2 OS=Synechococcus sp. (str... [more]
RL2_GEOSF1.105e-2260.9850S ribosomal protein L2 OS=Geobacter sp. (strain ... [more]
RL2_DESMR1.105e-2262.2050S ribosomal protein L2 OS=Desulfovibrio magnetic... [more]

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Properties
Property NameValue
Genbank descriptionC07004D01SK SaltLeaf1 Citrus clementina cDNA clone C07004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299948 ID=CX299948; Name=CX299948; organism=Citrus clementina; type=EST; length=249bp
ACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAG
CGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTA
AAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAAC
AGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAG
CCGGATCTAAATGTTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
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