CX299948

Overview
NameCX299948
Unique NameCX299948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length249
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_SYNP6 (50S ribosomal protein L2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplB PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQ+ RAAGA A+++AKEG    LKLPS EVRL+ K C AT+G VGN      SLG+AG K WLG+RP VRG
Sbjct:  142 HNVELVAGKGGQIVRAAGASAQVVAKEGNYVALKLPSTEVRLVRKECYATIGAVGNAEVRNTSLGKAGRKRWLGRRPEVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_SYNJB (50S ribosomal protein L2 OS=Synechococcus sp. GN=rplB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  G+GGQ+ RAAGA A+++A+EGK  +LKLPSGEVR+I   C AT+GQ+GNV  N  SLG+AG   WLG+RP VRG
Sbjct:  148 HNVELYPGRGGQMVRAAGAGAQVVAREGKYVSLKLPSGEVRMIRGECYATIGQLGNVDHNNISLGKAGRSRWLGRRPKVRG 228          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_SYNE7 (50S ribosomal protein L2 OS=Synechococcus elongatus (strain PCC 7942) GN=rplB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQ+ RAAGA A+++AKEG    LKLPS EVRL+ K C AT+G VGN      SLG+AG K WLG+RP VRG
Sbjct:  142 HNVELVAGKGGQIVRAAGASAQVVAKEGNYVALKLPSTEVRLVRKECYATIGAVGNAEVRNTSLGKAGRKRWLGRRPEVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_DESDA (50S ribosomal protein L2 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rplB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 53/82 (64.63%), Postives = 60/82 (73.17%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+  GKGGQL RAAG  A+L+AKEGK A L+LPSGEVR +   C ATVGQVGNV      LG+AG   WLG+RP VRGV
Sbjct:  148 HNIELYPGKGGQLCRAAGTYAQLVAKEGKYALLRLPSGEVRKVLVTCVATVGQVGNVHHESIRLGKAGRNRWLGRRPKVRGV 229          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_GEOBB (50S ribosomal protein L2 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rplB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+ +GKG QLAR+AG  A+L+AKEGK   +KLPSGEVR+I  +C AT+GQVGN      S+G+AG   WLG RP VRGV
Sbjct:  142 HNIELKIGKGAQLARSAGTFAQLMAKEGKYGQVKLPSGEVRMILMDCKATIGQVGNADHENVSIGKAGRSRWLGVRPHVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_PORYE (50S ribosomal protein L2, chloroplastic OS=Porphyra yezoensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+    GGQ+ RAAG  A+++AKEG   T+KLPS EVR+I K C AT+GQVGN+ A+  +LG+AG   WLGKRP VRGV
Sbjct:  142 HNIELRPSCGGQIVRAAGTYAQIVAKEGTFVTVKLPSSEVRMIRKECYATIGQVGNIDASNITLGKAGRNRWLGKRPTVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_GRATL (50S ribosomal protein L2, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl2 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+   KGGQ+ RAAG  A+++AKEG   TLKLPS EVRLI K C AT+GQVGN+ A+  ++G+AG   WL KRP VRGV
Sbjct:  142 HNIELNPLKGGQIVRAAGTYAQIVAKEGAFVTLKLPSNEVRLIRKECFATIGQVGNIDASNINIGKAGRNRWLSKRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_TREDE (50S ribosomal protein L2 OS=Treponema denticola GN=rplB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 48/82 (58.54%), Postives = 63/82 (76.83%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+T+G+GGQ+AR+AGA A + AKEG+  T++LPSGE RL++K C AT+G+VGN      SLG+AG   WLG RP VRG+
Sbjct:  142 HNIELTIGRGGQMARSAGAGALVAAKEGEYVTIRLPSGETRLVNKKCYATIGEVGNEDHMNTSLGKAGRSRWLGIRPTVRGM 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_MOOTA (50S ribosomal protein L2 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HN+E+  GKGGQ+AR+AGA A+L+AKEG  A L+LPSGEVR + ++C ATVGQVGN+     ++G+AG K WLG RP VRGV
Sbjct:  142 HNVELKPGKGGQMARSAGAGAQLMAKEGGYALLRLPSGEVRKVQESCRATVGQVGNLDWENINIGKAGRKRWLGIRPTVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_DESVV (50S ribosomal protein L2 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 52/82 (63.41%), Postives = 59/82 (71.95%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+  G+GGQ  RAAG  A+L+AKEGK A L+LPSGEVR +   C ATVGQVGNV     SLG+AG   WLG RP VRGV
Sbjct:  142 HNIELQPGRGGQFCRAAGTYAQLVAKEGKYALLRLPSGEVRKVLAACCATVGQVGNVNHENISLGKAGRARWLGNRPKVRGV 223          
The following BLAST results are available for this feature:
BLAST of CX299948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_SYNP61.443e-2260.4950S ribosomal protein L2 OS=Synechococcus sp. (str... [more]
RL2_SYNJB1.443e-2260.4950S ribosomal protein L2 OS=Synechococcus sp. GN=r... [more]
RL2_SYNE71.443e-2260.4950S ribosomal protein L2 OS=Synechococcus elongatu... [more]
RL2_DESDA1.885e-2264.6350S ribosomal protein L2 OS=Desulfovibrio desulfur... [more]
RL2_GEOBB2.462e-2260.9850S ribosomal protein L2 OS=Geobacter bemidjiensis... [more]
RK2_PORYE2.462e-2259.7650S ribosomal protein L2, chloroplastic OS=Porphyr... [more]
RK2_GRATL2.462e-2260.9850S ribosomal protein L2, chloroplastic OS=Gracila... [more]
RL2_TREDE3.216e-2258.5450S ribosomal protein L2 OS=Treponema denticola GN... [more]
RL2_MOOTA3.216e-2260.9850S ribosomal protein L2 OS=Moorella thermoacetica... [more]
RL2_DESVV3.216e-2263.4150S ribosomal protein L2 OS=Desulfovibrio vulgaris... [more]

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Properties
Property NameValue
Genbank descriptionC07004D01SK SaltLeaf1 Citrus clementina cDNA clone C07004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299948 ID=CX299948; Name=CX299948; organism=Citrus clementina; type=EST; length=249bp
ACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAG
CGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTA
AAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAAC
AGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAG
CCGGATCTAAATGTTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
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